RNA id: XM_021606991.2


Basic Information

Item Value
RNA id XM_021606991.2
length 2716
RNA type mRNA
GC content 0.44
exon number 11
gene id fbxo3
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57621795 ~ 57635241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATAACAAGAAAGCATGCGGAAACGCTCTGTCACAATAGATGGGGCGGGACTTGAAGCGAAACTCCAGGTTCCAAAATGGCAGCGTCCATGGAGCTAAGCTTGAACAATTTACCCTCCGATCCTTTGCTGTTAATGTTATCCTTTCTTGACTTTAGAGATTTGATCAGTTGCAGTTTTGTGAGTAGACGACTCAACGAGCTTTCCGGTCACAACCCATTATGGAAAGGCCTCTGTTTGAAACATTGGCTCTTAACTGAGTCAGACAAAATTCAGAAGTTTCAAACCTGGAAGGAACTCTTCCGAGAGTTCTATACTGACTTGGGTCGTTACATTGATCACTATGGCACCCTGAAGAAAGCCTGGGATGACCTGAAGAGATACCTTGACCAGCAGTGCCCCAGGATGATTGCCTCTCTCAAAGAGGGAGCAAAGGAGGAAGAGCTGGATGGCATTGAGGCCCAGATTGGTTGCAAGCTTTCAAATGACTATCGGTGCTCATACCGGATACACAATGGGCAGAAGCTGGTCGTTCCTGGGTTAATGGGAAGCATGGCCTTGTCTAACCACTACCGCTCAGAGGACCTGCTGGATATTGAAACGGCAGCAGGTGGCTTTCAGCAGCGCAAGGGCATGAGGCAGTGTTTGCCCCTCACCTTCTGCTTCCACACAGGCCTCAGCCAATACATGGCCCTGGAGGGCACTGAGGGCCGCAGCCGCAGCGAGATCTTCTACCACTGCCCGGATCAAATGGCACAAGATCCATCTGCAATTGACATGTTCATCACAGGGTCCAGCTTTACTGAGTGGTTTACCTCATACGTCCATAATGTGGTTACAGGAGAATACCCCATCATCCGGGATCAGATCTTCAGGTACGTCCATGATAAGCAGTGTGTTGCCACCACGGGGGATATTACTGTTTCAGTGTCTACCTCTTTCTTACCGGAGCTTAGCTCTGTGCATCCTCCACATTTCTTCTTCACCTATCGGATCAGGATTGAAATGGCAAAGGATGCCCTCCCTGAGAATGCTTGCCAACTGGACAGTCGTTATTGGAAGATCACCAATGCTAATGGCAACGTGGAGGAGGTCCGTGGGCCAGGCGTTGTTGGAGAGTTCCCGGTGATGACTCCGGGTAAAGTACATGAGTACGCCAGCTGCACAACCTTCTCTACTACCTCAGAGTACATGGAAGGCCACTACACCTTCCACCGTCTCAAGAACAAAGAGGAGATCTTCGACGTCTGCATCCCCCGCTTTCACATGGTTTGCCCTCCGTTCCGTGAGTCAATTGTACGGTCGGGATCAGCAAGGGATGTTTCAAGTGCATCTTTTAACGAAGACAACTCGTCAGACACCGATGACCATAATGAGGGTGAGCTTCGAGGCATTAATATGGCAGCCCCAGGGGGACGATGCCCACGCCACATCTGATACACTTTTCTCACCACAGGACTCAATTAGGAAAGGGGCTAGGAAGGACTTTCACAATTACATAAGAGTAAATTTAGTTTTTTGTTTGTAAAGCTGTATTTACCATTGGCTGATAGTCATTGCCCTGTGTGAACCTTTCCACCCCAGCTCGATGAGATACTACCACAGCCTCTGCAATATGCCCTCCCATGTAAATCCAAGATCGCTCCAttgtttgttttctcattttttcAACAATGGAGCGATCTGGAACTGGACATTGTCTATTGAGAGCAGGGTTGTCACCTCTTTTTCAATAGTAACATTGTTCATTCTCTAGCTGGCTGCCTAGTGCATAGAGCTAAAGTGTAGTTTGGTGCTCTATCTAAATCCTGAGTATTCCCTTTTTTCCTTggcatatgtagtgtgtgtgtagtcataTTCCTTGTATAAAAAGCCACAGCATCTCATTGATGTATTGTCAATGCATCATCAAAAAGTACTTGTTTTTACATTGCAGCTGTTTCTGCAGCAGTGTTAAACATGTGTAACTATGATGATCTTAATCAGAGATGCTCACTGCCAGTGGTTTTtcaaaccaacaaaaaaaacaaggaaTTATATGGAAACACACAACTCATAAAAGCTGGGATGTTTGCATATgctaacaacaatgacaaagaGAAGCCCACATCAAAACTGTTGTGCTACATTGGATGCTGTCTGTATATCTAATCGATATTCAGGAACATGTTAATGTGGGCTTGACTCTGTCATGCATTATCTCTGTCATGCATTAATGCATATCATATTTTATTAATTGCAATGTGATTATGACTATGATCCTTTGAAAGTCTGCAGAAACAAACAACTGTTTAGTAAAGCAGCCAATCAGTGTGCAGTTTCTCATAGAAATCTGAATGTTTGAACAATGAGCTATAGCACCCtctgtatttatttggacagtgaagctacaaTTAGTAAATTTGGTTCTACTCCAGCATTTTCAATTTGAGATCAAGTGTTTTatatgaggcgacagtacagaatgtcaccttttatttgagatTATCTCTATACATATCTGTTTTGCTGTTTACAAATGAATGCactttatgtacagtgccttcagaaagtattcccacccatttactttttccacattttgtgttacagcctgaattttaaaatgGAATAATTTGAGATTTTGTGTCCCTGGCCTACACGTAATACCACAATGTCAAAGTTGAattttgtttttagaaatgtttacaagttaattaaaaatgaaaagctgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595731 lncRNA upstream 27126 57594401 ~ 57594669 (+) True G525655
TU595723 lncRNA upstream 27629 57592654 ~ 57594166 (+) True G525647
TU595732 lncRNA upstream 34479 57585518 ~ 57587316 (+) True G525656
TU595730 lncRNA upstream 37705 57581812 ~ 57584090 (+) True G525654
TU595887 lncRNA upstream 189243 57429603 ~ 57432552 (+) True G525799
TU595991 lncRNA downstream 46747 57681988 ~ 57682196 (+) True G525897
TU595997 lncRNA downstream 59391 57694632 ~ 57694840 (+) True G525903
TU595999 lncRNA downstream 60027 57695268 ~ 57695488 (+) True G525905
TU596002 lncRNA downstream 63209 57698450 ~ 57698764 (+) True G525908
TU596073 lncRNA downstream 175499 57810740 ~ 57810945 (+) True G525969
XM_036981766.1 mRNA upstream 30456 57587593 ~ 57591339 (+) True LOC110526205
XM_021606982.2 mRNA upstream 53322 57558525 ~ 57568473 (+) False atg13
XM_021606996.2 mRNA downstream 4196 57639437 ~ 57642487 (+) False LOC110526214
XM_021604991.2 mRNA downstream 9426 57644667 ~ 57647053 (+) True aplnr2
XM_021606998.2 mRNA downstream 14691 57649932 ~ 57659929 (+) False psmc3
XM_021606999.2 mRNA downstream 14702 57649943 ~ 57659929 (+) True psmc3
XM_021607001.2 mRNA downstream 77920 57713161 ~ 57716278 (+) True LOC110526217
TU595951 other upstream 15428 57604108 ~ 57606367 (+) True G525861
TU595721 other upstream 40725 57576084 ~ 57581070 (+) True G525645
TU593913 other upstream 1501061 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1705849 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 2055296 55563748 ~ 55566499 (+) False LOC110526167
TU595717 other downstream 4233 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 68217 57703458 ~ 57710340 (+) True G525912
TU596076 other downstream 182583 57817824 ~ 57818280 (+) True G525972
TU596687 other downstream 475665 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 636838 58272079 ~ 58272836 (+) True G526628

Expression Profile