RNA id: XM_021604991.2


Basic Information

Item Value
RNA id XM_021604991.2
length 2151
RNA type mRNA
GC content 0.50
exon number 2
gene id aplnr2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57644667 ~ 57647053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TgagaagaggagagcaggggagtgggaggggctgagggacaGGGAGATCTACTATATCTGGAGCAGGGGGATTCACAGAGCACTAGTGAGACACACCTCCAAGCCTGGACAAAAATGACCTGAGACAAGAGTGGTTTCAGTGGAATATGGGAACAGGCTATCATCACTAAAGTCCGTTTTCAACAAGTTCAGAAGAAGAAGACCCTGATCTTCAGGTGTTGAGATGCTGTGTACAAGACTCAACACAGAAGTTGTCATAAAAGCAGAGACATTGACCTGGAAACATTGAAAACAAGAGAAAGAATATATCATTTTCTTAACCCTGCAACAAGAGACAGTGGCTGGTCATAGACTCTCACATTTATCCACTCTGCCCATCCCATTTATGTCGGAATCTGAGCTTATGCCCTCAGCATCCCCCTCTCCGCCCCCGTTTCACCAGTGTGACTACAGAGAATGGAGACCCACATGGGTTATCATACCCTCAGTCTATCTCCTGGTATTTGTTTTGGGCTCCCTGGGAAATGGGCTTGTCCTCTGGTCATACCTGGATCGACCTGAGGGTAAACCAGCCGGCGTGGGGACCTGCACCAATCGGCGTCTTCAGCAATCTGGAAGGAGTTCTACCCCCAAGTTGTCTGACTCCTCCCGTTCCCTTACTGACTCACTCATTGCCAGCCTGGCAGCAGCAGACCTGGCTTTTGTGGTAACCCTGCCCTTGTGGGCAGCCCACACAGCGCTAGACTACCACTGGCCCTTTGGCAAGCCTCTTTGCCAAGTCAGCAGCTATTTAGTGGCCCTCAACATGTATGCTAGTGTGTTCTCCCTTACGGTCCTGAGCATGGAGCGTTACTGGGTTATTGCTGGCCGACGGCGGTCCAGTAGGGCCCAGGGGAGTGGAGCCTGCCGAGCTGCTTGGGTAGTGGGGAGCGTTTGGGTGGTGGCAGGTATCCTTGCTCTTCCTGCGCTGCTACTGAGGACTGTAAGGGAGGTGGATGTAGGGGGTCAGTATGAAGAAGACTGGCAGACAGCTGAGGAAGAGGAACCCTCGGATCATGATCACATGCCCATGTTCATATCTTCCTGTATGATGGACTACTCTGGTCTGATCTCAGCAGAGCTGGAGGAAGATGACAGGGAGCAGGCAGAGCTACTGTGGACGGCGGCTCTAGGACTTAAATCCACCTTGGTTGGCTTTCTGTTGCCTCTGATCATCTTATTGATATGTTACTGCTCCCTAGGCCGCCTCCTCAGCCGCCATTTTGGACAGGGCCCACGCCCCGACCGCCGACGCCAACGCCGCCTTTTGCGAGTTATAGTCACCTTAGTGCTAGCCTTCTTCCTCTGCTGGCTTCCCTTTCATGCCAACAAAACACTTTCCATGCTCGTGGATTTAGAGCTGCTGCCCTACTCCTGCCCATTTGACCGGACTCTGGTTGCGGCTCACCCCTATGCTACCTGTCTAGGGTATGTCAATAGTTGCCTCAACCCCCTTCTATATGCTTGTTGTGATGTGGCCTTTCGGAAGCGCTGCCGGGCCTTACTGCAGTGGTTGTGGTGCAGGGGTAGGTGTGGGAGTCCAATGACAGTAAATGATGATGACAATAGGGAACAAGCCAGCCGGAGTTCTGCAATTCCTTCTGGAACACGCAAGGAAACAGGAGATGGAATTGAGGGGAAGGATGACGTGAGGCATGGCAGAGACTGAGAGGAGGGTAGGAGTGCTGTGGAACCTCAGTCAGAAGAGGACACCAATAAACAGAGACGGATATCCTGGGAAATGTGCAACCCTTACTGTATTCACGTAACCCCTCAGGAGATACATAAACTCAATAAATTCCACTGGGAATGTGTTTGATCGAAAAACTGTCATTTCTTCCAAGGAGATAGAAAGGAGACCTTCTAGAAAGACACTGGCAATAAAGAAAATGTATATTATGTGCTACCAAGCCAACAGATGGGTtttctgtatatattttttgatatacagtaccagtcaaaagtttggacacacctacccattcagtACTATAGCTGCATAAGAATAAGTATGAAATACACATTACAATTGAATACTAAGAATTGTGAATGTAGTAtccctttttttctaagtgtagtGCAATAAAATTAATGCTTCTCTGTTAAGGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595731 lncRNA upstream 49998 57594401 ~ 57594669 (+) True G525655
TU595723 lncRNA upstream 50501 57592654 ~ 57594166 (+) True G525647
TU595732 lncRNA upstream 57351 57585518 ~ 57587316 (+) True G525656
TU595730 lncRNA upstream 60577 57581812 ~ 57584090 (+) True G525654
TU595887 lncRNA upstream 212115 57429603 ~ 57432552 (+) True G525799
TU595991 lncRNA downstream 34935 57681988 ~ 57682196 (+) True G525897
TU595997 lncRNA downstream 47579 57694632 ~ 57694840 (+) True G525903
TU595999 lncRNA downstream 48215 57695268 ~ 57695488 (+) True G525905
TU596002 lncRNA downstream 51397 57698450 ~ 57698764 (+) True G525908
TU596073 lncRNA downstream 163687 57810740 ~ 57810945 (+) True G525969
XM_021606996.2 mRNA upstream 2180 57639437 ~ 57642487 (+) False LOC110526214
XM_021606991.2 mRNA upstream 9426 57621795 ~ 57635241 (+) False fbxo3
XM_021606990.2 mRNA upstream 9426 57621797 ~ 57635241 (+) False fbxo3
XM_036981766.1 mRNA upstream 53328 57587593 ~ 57591339 (+) True LOC110526205
XM_021606986.2 mRNA upstream 76194 57558525 ~ 57568473 (+) False atg13
XM_021606998.2 mRNA downstream 2879 57649932 ~ 57659929 (+) False psmc3
XM_021606999.2 mRNA downstream 2890 57649943 ~ 57659929 (+) True psmc3
XM_021607001.2 mRNA downstream 66108 57713161 ~ 57716278 (+) True LOC110526217
XM_021607003.2 mRNA downstream 82391 57729444 ~ 57734935 (+) True LOC110526219
XM_021607002.2 mRNA downstream 97079 57744132 ~ 57760940 (+) True LOC110526218
TU595717 other upstream 2185 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 17048 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 38300 57604108 ~ 57606367 (+) True G525861
TU595721 other upstream 63597 57576084 ~ 57581070 (+) True G525645
TU593913 other upstream 1523933 56110279 ~ 56120734 (+) True LOC110526175
TU596007 other downstream 56405 57703458 ~ 57710340 (+) True G525912
TU596076 other downstream 170771 57817824 ~ 57818280 (+) True G525972
TU596687 other downstream 463853 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 625026 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 671867 58318920 ~ 58371968 (+) True LOC110526933

Expression Profile