RNA id: XM_021606999.2


Basic Information

Item Value
RNA id XM_021606999.2
length 1550
RNA type mRNA
GC content 0.51
exon number 12
gene id psmc3
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57649932 ~ 57659929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcggtaatacAACTCCTCGGTTGTAGTCTGCCGATTAACCTcaaagaagaagtagaagaactACCAACACGAAGACAAGAGGAAAGATGGCGTCGCTGAATGACAGATCAGTTTGGGATGAGGATGGGATCGGCGAAGAAGTCCTCAAAATGTCCACCGAAGAGATCGTTCAGCGGACACGTCTTCTGGACAGTGAAATAAAGATCATGAAGAGTGAGGTATTGAGGGTAACCCATGAGCTGCAGGCCATGAAGGACAAAATCAAAGAAAACACAGAGAAGATCAAAGTGAACAAGACCCTGCCGTACCTGGTCTCCAATGTCATCGAGCTTCTGGATGTGGACCCAAATGACCAGGAGGAGGATGGAGCAAACATTGATCTAGATTCCCAGAGGAAGGGCAAATGCGCTGTCATCAAAACATCTACAAGACAGACATACTTCCTCCCGGTCATTGGCTTGGTGGATGCAGAGAAGCTGAAGCCGGGAGACCTCGTGGGGGTAAACAAGGACTCATACTTGATCCTGGAAACCCTGCCCACGGAGTATGACTCCAGAGTCAAAGCCATGGAGGTGGACGAGCGCCCCACTGAACAGTACAGTGACATTGGTGGATTAGACAAACAGATCCAGGAGCTGGTGGAAGCAATTGTTCTGCCCATGAACCACAAGGAGAAGTTTGAGAACCTGGGTATTCAGCCACCTAAGGGGGTTTTGATGTATGGCCCCCCAGGCACAGGGAAAACCCTACTGGCTAGGGCCTGTGCTGCCCAGACCAAGGCCACATTTCTCAAGCTGGCTGGCCCACAGCTGGTCCAGATGTTCATTGGTGATGGTGCCAAGCTTGTCCGAGACGCCTTTGCCCTGGCCAAGGAGAAGGCCCCCTCCATCATCTTCATAGATGAGCTAGACGCCATTGGAACCAAACGGTTTGACAGTGAGAAAGCAGGTGACAGGGAGGTTCAGAGAACTATGCTTGAGCTCCTCAACCAGCTGGATGGGTTCCAGCCCAACATGCAAGTTAAGGTTATCGCTGCCACGAACAGGGTGGATATCCTAGATCCCGCACTGCTGCGTTCTGGACGTCTGGACCGTAAGATTGAGTTCCCAATGCCTAATGAGGAAGCACGAGCCCGCATCATGCAGATTCACTCACGCAAGATGAACGTCAGCCCTGATGTCAACTACGAGGAGCTGGCCAGGTGCACTGATGATTTCAATGGCGCCCAGTGCAAAGCAGTGTGTGTGGAGGCGGGTATGATCGCCCTTCGCAGGGGGGCAACTGAGCTCAATCATGAGGACTACATGGAAGGCATCTTAGAAGTACAGGCCAAGAAAAAGGCCAACCTGCAGTACTACGCCTAAGGCCCTGGAGCTTCAGGGGAAGGGTGCATGTGATACTCTCCAGATGTGTCCAAAACATGAACCAATCTCTGTACTGTTAGTGTGCAACATTGTCACTTCTCTCTCGTGTGAGACCTGTTTTGGCTTGTTTATGGTCCATGAAAGAATAAAGGCTTTACATTTGCCCTTTGGCTGGATGGAAAAGA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03065 PSMC3, RPT5; 26S proteasome regulatory subunit T5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595731 lncRNA upstream 55274 57594401 ~ 57594669 (+) True G525655
TU595723 lncRNA upstream 55777 57592654 ~ 57594166 (+) True G525647
TU595732 lncRNA upstream 62627 57585518 ~ 57587316 (+) True G525656
TU595730 lncRNA upstream 65853 57581812 ~ 57584090 (+) True G525654
TU595887 lncRNA upstream 217391 57429603 ~ 57432552 (+) True G525799
TU595991 lncRNA downstream 22059 57681988 ~ 57682196 (+) True G525897
TU595997 lncRNA downstream 34703 57694632 ~ 57694840 (+) True G525903
TU595999 lncRNA downstream 35339 57695268 ~ 57695488 (+) True G525905
TU596002 lncRNA downstream 38521 57698450 ~ 57698764 (+) True G525908
TU596073 lncRNA downstream 150811 57810740 ~ 57810945 (+) True G525969
XM_021604991.2 mRNA upstream 2890 57644667 ~ 57647053 (+) True aplnr2
XM_021606996.2 mRNA upstream 7456 57639437 ~ 57642487 (+) False LOC110526214
XM_021606991.2 mRNA upstream 14702 57621795 ~ 57635241 (+) False fbxo3
XM_021606990.2 mRNA upstream 14702 57621797 ~ 57635241 (+) False fbxo3
XM_036981766.1 mRNA upstream 58604 57587593 ~ 57591339 (+) True LOC110526205
XM_021607001.2 mRNA downstream 53232 57713161 ~ 57716278 (+) True LOC110526217
XM_021607003.2 mRNA downstream 69515 57729444 ~ 57734935 (+) True LOC110526219
XM_021607002.2 mRNA downstream 84203 57744132 ~ 57760940 (+) True LOC110526218
XM_036980581.1 mRNA downstream 183065 57842994 ~ 57863756 (+) False LOC110526223
XM_036980583.1 mRNA downstream 183065 57842994 ~ 57863756 (+) False LOC110526223
TU595717 other upstream 7461 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 22324 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 43576 57604108 ~ 57606367 (+) True G525861
TU595721 other upstream 68873 57576084 ~ 57581070 (+) True G525645
TU593913 other upstream 1529209 56110279 ~ 56120734 (+) True LOC110526175
TU596007 other downstream 43529 57703458 ~ 57710340 (+) True G525912
TU596076 other downstream 157895 57817824 ~ 57818280 (+) True G525972
TU596687 other downstream 450977 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 612150 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 658991 58318920 ~ 58371968 (+) True LOC110526933

Expression Profile