RNA id: XM_021607009.2


Basic Information

Item Value
RNA id XM_021607009.2
length 1398
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110526223
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57842994 ~ 57863756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGAAGAAGAGGCGCAATTTAGACACACAAGCAGCCCTGGGCACTTGCACAACCCACTGTTTATTTCCGTGTTACTTCCTGGTTCTGTCTAGTCTCTGGTGTTTTTCCGGAGAGAAATATGTAAACAGCGGTAACATTTTTTGGATTCGACTACATATCAACGCGAGCGACACAAGTCtaatcgttttttttttctttagatCCCCGGCTTGCGGTTACAGATTGGGACAGACTCGTTGAGGAGATCAGGAGTTGTAGGACTTCTTCGCCCCAGTACTTCTCGTCGATGGCAGACTCCCGAGAAAGAAGGAAAACTGGCGAAGATGAGCCTCAGGGTGCAGTCGGGGGTGAAGATGTCAACGACGAGAGAATTATGGAACAAGGAGCTATTGTTTTAAGAGGGTATGTCATAGAGAGGATCGGTGCAGAAAACCCAGGGAGGCATTTGGCTCCAGAGGACCTTGGTGGCAGACCCAACGAACAACAGGACCACCAAGTCAAAAACATGGTACAACAGCTGCTGCTGATCGCTGATGACTTGAACAGAAATGCTGAGCTACAACACCTAATAAACAGAGTCCAGGTAAACTGTGCCCAGGATGTGTTCTTCTCAGTGGCCAGGGAAATCTTTGCAGATGGTATCAACTGGGGCAGAGTGGTCTCCCTGTTTCACTTGGCCTACAAGCTTATTTACAAGGCACTGACACAGAACCGCTTAGAAAGCATCAAGATGGTTATTAACTGGGTATTACAGTTCATCAGGGAAAATGTCTCCGCTTGGATCCGACAGCAAGGAGGATGGGAGGCGGTTATTAGCACCGTGTCACATTGGCGCACGGCGTCGCTTGTGGCTGCAGTGGCTTTCGTGACGGTCATGGTTTACTGGAGGAAAACACGCTGACGTCTCAGGAAGTGCCCTTGGTGAAATCAAAGTGCTCTTAAAATTTGTACATTTCTCTGGGAACGGGTTAATGTTAAACGGGTTAATATGCTATGTCCTGTGCAGTAGATTTGACTTTGGGGTAATGGTGACATAGTAATCTTGTTTTTATATGTTGAATTGATCTGAGAAGGAACAGTTGGTGCCTTTTGGTACTGTACTCCACACTGAGAAAGTATTTATTAGTACCAATGTGAAACTGTATTTTTCTAAAAATATTTTTCTATTGATCAAAAAAAGAACCTTGTAAAGTGTTTTATTGAACAATGTTTTTTGAGCATTAGAGGTTTTATTGAAGCCCTAATCTTCTATTGATTTGGAATTAAAAGTAAGCCACTACAATTTTTTTCACAGCtctaaatatatattatttttatgtATCTGAATGGAACAAATGTCTTTTAAATTGTGGCAAACATGCACACGTGTTTAATAAAAAATACTTTTGCCAAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596533 lncRNA upstream 562 57850993 ~ 57851197 (+) True G526395
TU596524 lncRNA upstream 10906 57840511 ~ 57840853 (+) True G526386
TU596513 lncRNA upstream 20972 57830541 ~ 57830787 (+) True G526375
TU596073 lncRNA upstream 40814 57810740 ~ 57810945 (+) True G525969
TU596002 lncRNA upstream 152995 57698450 ~ 57698764 (+) True G525908
TU596550 lncRNA downstream 5744 57869500 ~ 57869702 (+) True G526411
TU596554 lncRNA downstream 9010 57872766 ~ 57873110 (+) True G526415
TU596555 lncRNA downstream 9412 57873168 ~ 57873368 (+) True G526416
TU596557 lncRNA downstream 10360 57874116 ~ 57874980 (+) True G526418
TU596586 lncRNA downstream 80059 57943815 ~ 57945202 (+) True G526447
XM_021607002.2 mRNA upstream 90819 57744132 ~ 57760940 (+) True LOC110526218
XM_021607003.2 mRNA upstream 116824 57729444 ~ 57734935 (+) True LOC110526219
XM_021607001.2 mRNA upstream 135481 57713161 ~ 57716278 (+) True LOC110526217
XM_021606998.2 mRNA upstream 191830 57649932 ~ 57659929 (+) False psmc3
XM_036980584.1 mRNA downstream 52589 57916345 ~ 57921070 (+) True fgf3
XM_021607014.2 mRNA downstream 65022 57928778 ~ 57936266 (+) True LOC110526226
XM_021607011.2 mRNA downstream 77484 57941240 ~ 57943684 (+) True fgf19
XM_021607019.2 mRNA downstream 288084 58151840 ~ 58158582 (+) True LOC110526232
XM_036980591.1 mRNA downstream 355133 58218889 ~ 58228939 (+) False LOC110526234
TU596076 other upstream 33479 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 141419 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 209277 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 224140 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 245392 57604108 ~ 57606367 (+) True G525861
TU596687 other downstream 247150 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 408323 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 455164 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 914967 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1907952 59771708 ~ 59772084 (+) True G528653

Expression Profile