RNA id: XM_021607019.2


Basic Information

Item Value
RNA id XM_021607019.2
length 2323
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110526232
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58151840 ~ 58158582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTACACGCATTTATTATTTGGGCGGAGCGGTTGTTAATATATAACCTTTTATTCGTTATATCGTAAACATCTGGGCCAAGAGTTTTCCCATAGGTCCTAAAAGTTGtctccctagAGATGTCTTCTGCAGTGGCCATGGAGGCCACCCGGAGGCGCCAGAGGCTCAGCTCTAACGGGGGGGCGTCTGAGACCACGGAGGAACCTGCAGGGCAGTGGGGAAGAGCATGGGAGGTGGACTGGTTCTCTCTGAGCGCTGTGATCCTGCTGCTGTGCACAGCTCCCTTCCTGGTGTTCTTCTTTGTCATGGTGTGTGACCAGTACCAGTGCTCGGTCAGCCAGCCCCTGGTGGAGCTCTACAGTGGAGAGGCCACCCTGCGCTCCATCTGGGACAAGGCCCCTTCCTTCACCTGGACCGCTGCTCAGATCTACACCGTCTGGGTCTCCTTCCAGGTGGTGCTCTACATGTGTGTTCCTGATGTCACTCATAAGTTCCTGCCTGGCTATGCAGGTGGGGTTCAGGATGGAGCTCGCACCCCAGCAGGCCTCATAAACAAGTATGAGATCAACGGTTTACAGTCGTGGCTGATCACCCATGCCCTGTGGTATGCCAACGCTCAATACTTCCACTGGTTTTCCCCCACCATAATCTTCGACAACTGGATCCCACTGCTGTGGTGCACCAACATACTGGGCTATGCTGTGTCCACCTTTGCCTTTGTCAAGGCCTACCTCTTCCCCACCAATGCAGAGGACTGCAAATTCACAGGCAACGTCTTCTATAACTACATGATGGGCATTGAGTTCAATCCCCGCATCGGCAAATGGTTCGACTTCAAGCTCTTCTTCAACGGGAGACCTGGTATTGTTGCCTGGACTCTAATCAACCTCTCCTATGCAGCCAAACAGCAGGAGCTATATGGCTATGTGACCAATTCTATGATCCTGGTTAATGTGCTGCAGGCAATCTATGTTCTCGACTTCTTCTGGAATGAGGCATGGTACCTGAAGACGATTGACATCTGCCATGACCACTTCGGCTGGTACCTGGGCTGGGGAGACTGTGTGTGGCTGCCCTTCCTCTACACGCTGCAGGGCCTGTACCTGGTGTACAACCCAGTCCAGCTCTCCACAGCCCAtgctgctgctgtcctcctcttGGGTCTGGTGGGTTACTACGTCTTCCGCTCCACCAACCACCAGAAGGACCTGTTCCGCCGTACCGAGGGGAAGTGCTCCGTCTGGGGCAAGAAGCCCACCTTCATTGAGTGTGCCTACCGCTCGGGTGACGGCGGCCTGCACCACAGCAAGCTCATGACCTCCGGCTTCTGGGGCGTGGCACGCCACCTCAACTACACGGGCGACCTGATGGGCTCGCTGGCCTACTGTGCAGCCTGCGGCTTCGGCCATATTCACCCCTACTTCTACATCGTCTACATGACCATCCTGCTGGTGCACCGCTGTGTGAGAGACGAGCATCGCTGCAGCAGCAAGTACGGCAAAGACTGGAAGCGCTACACGGATGCAGTTCCCTATCGCCTGCTGCCTGGGATCTTCTAGAGTCGAGTCAGAGGTTGAAGGAATCCCTGCATCCTGAAAGAAGTTTAACAGAAGAAGGAGATGTGTGTTAAATGGACTGTTCACATTCCATGGGAAAGACGTTGATGACATTTtgagcaaagtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgcaatcctCAGCTACTCTCAGAACTGCTCTCACCGGTGCCTAGGAGCATTTCTCCGTAAATGTTGATACTATGGTACATATCTATGTTCTATGGTACATAGATGCTATGAGAAACTCTGCAAAATTGATTTCTAATTCAAATCTGTATTtaagtgtactgtagtctagcaATGTGAACATCACATAACCATACAGTAGCACTTAGTTGGCGTTGGTCAAGTAACTACAGCTACAAGTGAGCAATAATCTAGATGTCTTTTGACAATGCACTGTCGATGGCAAATGTCTCTTCTACTTAGGGGTCAGCCCAGCGTTACATGAAACGCTAGCAGCAGACTGGTATATTATGTTCAAGAAGCAGCTACAACTATACAATGATTGTTCCTGctaaaatacatttttctttatttctgtCAATATCTTTGAGGTACCTGTTATTTTAAAGTTTTTGTGCTAATAGTGCTTTTACTTTATCCAACAGTCATTTTGACATTTGATTTCAGTTGTTTGccttctttttaaaaaaaaaatttaacctCATCTGCCTTTCCTCAAGTGATAACTTAGAAAAGTAAATAAACCTAACATGGTGAATACA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00213 DHCR7; 7-dehydrocholesterol reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596721 lncRNA upstream 5506 58144622 ~ 58146334 (+) True G526574
TU596684 lncRNA upstream 45103 58106525 ~ 58106737 (+) True G526544
TU596682 lncRNA upstream 46516 58105073 ~ 58105324 (+) True G526542
TU596678 lncRNA upstream 50347 58101255 ~ 58101493 (+) True G526538
TU596676 lncRNA upstream 53664 58097930 ~ 58098176 (+) True G526536
TU596728 lncRNA downstream 754 58159336 ~ 58159886 (+) True G526581
TU596729 lncRNA downstream 5163 58163745 ~ 58164057 (+) True G526582
TU596736 lncRNA downstream 21578 58180160 ~ 58180369 (+) True G526589
TU596738 lncRNA downstream 23004 58181586 ~ 58181789 (+) True G526591
TU596646 lncRNA downstream 35557 58194139 ~ 58200097 (+) True G526506
XM_021607011.2 mRNA upstream 208156 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 215574 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 230770 57916345 ~ 57921070 (+) True fgf3
XM_036980583.1 mRNA upstream 288084 57842994 ~ 57863756 (+) False LOC110526223
XM_036980591.1 mRNA downstream 60307 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA downstream 60972 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA downstream 60972 58219554 ~ 58228939 (+) False LOC110526234
XM_036980592.1 mRNA downstream 61714 58220296 ~ 58228939 (+) False LOC110526234
XM_036980593.1 mRNA downstream 61714 58220296 ~ 58228939 (+) False LOC110526234
TU596687 other upstream 39021 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 333560 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 441500 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 509358 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 524221 57621848 ~ 57627619 (+) True fbxo3
TU596784 other downstream 113497 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 160338 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 620141 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1613126 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3813154 61971736 ~ 61979527 (+) True LOC110526282

Expression Profile