RNA id: XM_036980593.1


Basic Information

Item Value
RNA id XM_036980593.1
length 4342
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110526234
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58218513 ~ 58228939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTTTGAATCCCTGTACTATCAATCACTTGTCACCTTATGTGTCTATCATCTGTTCTACAGCCTCTGGCTGGCTATATCCTCACCTGCCTAATAACAGGAAGTTCACCATTAGTGGATATTGCCTCAGCCTCACCGCAGAGTGTCATCGCATTTGAAGCACGGGATAGCTATAAAACAGCAtacttttctctctgccccatggcaatgTGTGTAGAATCATAGGAAGTTAGCAGTTTTCTCCCGAAAAACACTCCTACCGTGCAGGAGCCCCCGTGAAACGGCGGTATGCCACTGGTGTAGCTACGTATGTTACTGCTTTTTTGGGGGGATGAATGAACTAGCCTTGCAAATATTATTTGGGGAGAGAACTCAAGTAGGCTAGTCATTTTAAACATGAGCAGATCGAGGACCTCTATGTCTTTGGTTTGCATAtgcaccaccaccacctgagaaTGTGGCCTCCTATCCCATTGTTttaatgttgtatttatttatttatttattttatttcacctttatttttaaccaggtaggccagttgagaacaagttctcatttacaactacaaCCATGTATCCAGCCAGCCACTAAACAGGATGACTGATAAAGCAGTGTCCAGAGTGGACTAAGTGACAGAACAAATATGTGGCTGAAATGTATGTAGAATGAATGGGCACAGCTTTGCCCTGGGTAATGTCTGGCTATTGGGTAGCACTAGGACCTGTGTTTCTGTAGGAGTGCTGATAGAGGTTCAGCTTAGCCCTTTAGATCGTCGTTCATTTGATTATTATGGACAGAGACCACCTGatgctagatcagcactcctactctgaggcaCTTGGTACATGGCGAGCCATGTAACTCTACCTTGAAACGACTTCAGTAGAGTTGAGAGAGATTTGATTATCTCTGGGTGCCCTCTACTGGCATTGATTTAAGTCAGAtgttatgtgtatatatatatatatctttttttttaaaacatgttttcagtcaGATGTAACCTGCGCCATTGGAAGGTAGTATCCATGAGTGATGGCTCGGCGTCATCGGCGTTGGCTGTCTTGTGTCATGGGTAGACATGTTATGCGTTGGAGAGGTTTTTGCTGGTTGGTTAGCAGTGTAAAATGAAGACTCTGTGGCTGTGACGGTGATGACGGCGATGCTCAAATTCGTCGTCATAGGAAGGATTTATTTTCGTCCGCTCCTAAGTGAGCGTTCACACTTACAAGTCAGCCAAAGCCTTTTGCAATGACCAATGAGAGCCAAAACGCATTACAGGATTTTGTAGTGAGCCTCAATAAAGGGAAAGTGTATTTTTATTGGAAAACATCATATCTCTCCAGTGGTTTAGTCCTCTAATCACTTTAACtcatttccatttaaaaaaaaagtttgtttGGTGTTTCCCGTGCCTCGTAGACCACATGACAGTGATGACACAATGTCAATGCACAGGCAAGTGTACAGCAAGGGTATAAGTTGAAACAACAGAGTCAAACTGTGTAACCCAGTATCTGCCATATACTGCATGTACTTCCTCTGTAATTCTATTTGCACACACATTACTTCCTTAGAATGCATGTAACCGCTCTGACCTCCCCTGCACCTCTTCGAGTGCTGTCGTTAGGACCCAAGATCTGTTCTAGTaatatttcaaatattttacccTGAACCTTGACTTCCCAGGTTGATAGCATATCCAACCAGTATTCAGTGGTCCAACCAGTATTCAGTGGACAGGCATGACGTCTCGCTATGAACGAAGGAAACAAATATTCGTGCTCCAACTACACTCAAGTCGATGTGGATGGTGTAAGATGCTGGATGGAAGTTGTCAATGAGCAGTTTAAGACGGAGAACCTCAGCACTATTATTAAATCTGTGGAGAAACTAGAAAGGGTTCTTGAAAACACAGCTTTGAATGAGACAACTTCAATCATTGTTGAGAGGCTTGTGGCTCACATATTCAGGGCCGAGGGCCACTTTACAGGGCTTAATATATCTGCCAGCCAAGAACGGGTAACATCAGACGGTGACCGTGTGGCCAACACTACCGTCAAGGTCCACCTGCCCAAAGAGCTCTTGAAAACCAACGAGAACAATACCATTATCTTCTGCATGATTACCTCACCAGAAAAATAtgggCAATTGGGGATTCTTGATGGCCGAATAGTAGGTCTGGCTGTGAGCAAGAAGAGAGTGTTAGGTCTGCATGACAAGGTCAATATCTCCATGCCTCTACAGCGCCCCACGCTGGAAAGTCAGGCTGACAAACAACCATCGTGTCAATTCTTTAATTTTTCAACCAATAAGTTCTACCAGGATGGCTGCACCACCGAGTGGAAGAGAGACGAGGGCCGTGTGGTCTGCTCATGTGACCACCTCACATACTTTGCTGTGCTGATGgtgtctccctccatctctgaaAGCGATCGGGAGATCCTAAGCTACATCACTCTGATTGGCTGCAGTCTGTCTCTGTTCTTCCTGGTGGTCACAATCGTTCTGTACGCCACTCAAAGAGGTGCAGGCACAGACATCTCCCTGAAGGTGCATATCAACCTGTCTGTGGCCCTGATCCTCCTCAACCTGCACTTCCTGCCCAGCCAGCAGGCAGCAGCATTATCCTCCTCTGGGCCATGTATCTATGTTGCTGTCCTTCTGCATTACTCTCTACTGGCCACCTTCACATGGACAGCAATCGAAGGCTTCCACCTTTACCTGTTGCTGGTCCGTGTCTTCAACATCTATGTCAGGAGATACCTGCTCAAACTGAGCCTGGTAGGATGGGGATTCCCTGCGGTCATTGTCATCGTGATTGCTATCATTGACAAAGACACATACAGCCGTGTGACTCTTCATCCTTCTAAGACCAATGGTACAGCTGTGGAGATGTGTTACCTCTCTAATGATGTGATGAAGCTGGTGACCACGGTGGGTCTGTTTGCCCTGGTGTTTGTGTTTAACCTCGGTATGCTGGCTGTGACTATGAGGCGCCTCAAGTCTCTGCGCACTGAACAGACGTCAAGGGAGAAGGGTAGGGCCAGGAGGGACACCTGCACTGTGCTGGGCATCACCTGTCTGCTGGGCATCACCTGGGGCATCATCTTCTTCTCCTTCGGCCAGCTTACCACGCCTGGCCTCTACCTTTTCTGTGTCCTCAACTCTCTACAAGGTTTTTTCATCTTCCTCTGGTTTTGTGTGTTCAAATGGAAGACTGAGGACAGCCAACCTGGCAGTGACACTCACTATACCAATTCCAGATCTGCCTGAGGACAAAGTCTGTTGTCAACCAATCCAGCACTGTTGTTATCAATGTTCATTTCAAACTTGATTGCGATTTTTTTCTTTTGAGAATACGAGCCCTAAACTGTAGACCTTCGAAAATGTCTACAAACCACCCACATGTTTTGTACCAGtacaatattgttatttttttatttttgcgaTTGTTTAGTTATGGAATGAAGGAAGGTGTTTTCAGAATTCCTTTCGTATGTGGTTTGTTCAATTCTAAATCATGTGAGCCAACAGGATCTGATGTAATGTGCTGAGATCCTATCCCTCACTAGTTGATTAACCTGCAACAGAAGATGAATAAGTTTGATCTAAGCAAAActgtagcctattcattgataCACCGCTCGAGCAAGCTGAAGTCCAGACTAGATTTGCATAAAACAAACGCAATGCCGCCATTTTCCTCCAAAGTTTACATAAAGATATTAAAATGTTGCAGTTATAAAATTTGACTATGAACAGTCATGAAATAAAACAGCTCCAAACATTAGAATAGACGTTTGTTCAAGGCACAGTTGGAAATACAAATGGGATGGGAGTTTACTCTGTCCAATGATGTGTTTATCTCTACAAAGCACACAGTGGTTTCACAGATCATTTGCTCACCCCACAAGGACATCAAATGTGAGTGAAATCAACTCCTAGCGTGTAAGTAAGTGTACGTGTTTGTGTGTAACGGAATATGAATCCATCCTATTTTGTCATTGTCAAGTTCAGCTATTGTGTTGATAATGTTGTGTCATTGTCTTACCTGAGTGACGGCAGAACGATATGTCTGGGAATAAGCAGAGATCACCGTGTTGATTATCAGAACGCATGGCTAGGTTTTGTAGGTATACCTTGTGGTATTAAGTAGTGTTAGCCTCGGTGTCAAGCTGAAATGAAATTCTCGGGCTGCATTGTGTACTTTACTGAGTGTGATGTTGAATGAGTGGCAAGGGCTATGGCAGTATGTTGAAAACAAGGATTACTTTGTAATGTATGTTTTTGGTCATTCATGTTTTCTACTGTTCTACCCTTAAAACAGCCACAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596648 lncRNA upstream 703 58218513 ~ 58219593 (+) True LOC110526234
TU596758 lncRNA upstream 8962 58211120 ~ 58211334 (+) True G526609
TU596757 lncRNA upstream 9492 58210523 ~ 58210804 (+) True G526608
TU596754 lncRNA upstream 9992 58210003 ~ 58210304 (+) True G526607
TU596753 lncRNA upstream 10780 58209284 ~ 58209516 (+) True G526606
TU596651 lncRNA downstream 20114 58249053 ~ 58256834 (+) True G526511
TU596779 lncRNA downstream 38329 58267268 ~ 58267483 (+) True G526624
TU596780 lncRNA downstream 38729 58267668 ~ 58267950 (+) True G526625
TU596782 lncRNA downstream 41690 58270629 ~ 58271477 (+) True G526627
TU596796 lncRNA downstream 56437 58285376 ~ 58285687 (+) True G526639
XM_021607019.2 mRNA upstream 61714 58151840 ~ 58158582 (+) True LOC110526232
XM_021607011.2 mRNA upstream 276612 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 284030 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 299226 57916345 ~ 57921070 (+) True fgf3
XM_021607009.2 mRNA upstream 356540 57851759 ~ 57863756 (+) True LOC110526223
XM_021607030.2 mRNA downstream 7321 58236260 ~ 58243576 (+) False LOC110526235
XM_021607031.2 mRNA downstream 7321 58236260 ~ 58243577 (+) True LOC110526235
XM_021607033.2 mRNA downstream 31564 58260503 ~ 58263649 (+) True LOC110526238
XM_036980595.1 mRNA downstream 115206 58344145 ~ 58408967 (+) False LOC110526933
XM_036980596.1 mRNA downstream 225509 58454448 ~ 58505295 (+) True LOC110526241
TU596687 other upstream 107477 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 402016 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 509956 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 577814 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 592677 57621848 ~ 57627619 (+) True fbxo3
TU596784 other downstream 43140 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 89981 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 549784 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1542769 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3742797 61971736 ~ 61979527 (+) True LOC110526282

Expression Profile