RNA id: TU596648


Basic Information

Item Value
RNA id TU596648
length 1081
lncRNA type read_through
GC content 0.46
exon number 1
gene id LOC110526234
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58218513 ~ 58228939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTCCTCCGTGTGTCCCGAGACAGGTGACCCAAAGCAcgaggagagagggaactaaAGTCCGTCTCCAGAGTAAGCAAATCCAGTTTACCCATGAGGATGCCATAGCCTACTCTTGGCTTGCCAAAACGCCGGACAAGGAAATGGATACCTTGTCCAAGTGTCCACTGTGCCACTGGGTACAAAGACGTGCTTCAAGTTGTTAAGAATAGTTTATGTTGGTTACCTTCCAAGGAGTTCCTCAGAAATTCGATAAATGTTAAGAGGAACTATTTTTACATGTGCTACGGCGAGGACATCAACACAGACAATGGCATTCATCAACTCCGTCGGTATCGCTTCCAGAAAACAAGGTTCACTCGAGTAGCCAGAGGTGTTGCAGCTGTTCGAAAGGTTGTCCTTTTGACTGCCAAACTACAAGTCTGCTCCACAGTTCTGTTTGAATAGACCACAGCCCCAGGAGGGGGATCGGAGAAGTCTTGCACTGTTGCCAGGATTTCTAAAGCGCGTAGGTTGCCTATTATTGCTTGCGGGCGTGTCCCAATTTTACTCACAATTCCGTATCAGGATTAGCTGCTAAAAAGTAATTTCCTAACAACCAGCTTTATGGTAAGTGGCATGTTGGAGTCACTGCACCAGAAGCCAGCTCACAAAGCACGCATAGTGACTTTAATCGTAATATGTCAGTAATTTACTGGACTGCTTTGTGTAACAGGCTTAACATTGACAGAATAAACGTGCAATAAACGCGCAAATGAGCCCAGCGAAACGGAAAACGGTTGAAGGTTAAATAACGGGTCCAAGTTTGTTGACAATTATTTACAGAACCCGACAAAGAAGTTGAAGTCGGCTGCAGCTGTCCAACACTCGCGCAAATCTAGCGCGGGTGTCCCCGAAGCCTGTTTTGAATCGCGGAGCCTCTTGTGATTATTTAATATGATGGTTCTCTTCCCGTTAAAATCCAGAATTTTCTTCCAGTTTTCCTGGACTCTTTccactctgttctgttcctcACCCGGGTCGATTTAAGTGCGTTTTATGGAGCGGGGCAAATCGAAGCTGGACTGGCTGCTTCATCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596758 lncRNA upstream 7179 58211120 ~ 58211334 (+) True G526609
TU596757 lncRNA upstream 7709 58210523 ~ 58210804 (+) True G526608
TU596754 lncRNA upstream 8209 58210003 ~ 58210304 (+) True G526607
TU596753 lncRNA upstream 8997 58209284 ~ 58209516 (+) True G526606
TU596751 lncRNA upstream 10913 58207366 ~ 58207600 (+) True G526604
TU596651 lncRNA downstream 29460 58249053 ~ 58256834 (+) True G526511
TU596779 lncRNA downstream 47675 58267268 ~ 58267483 (+) True G526624
TU596780 lncRNA downstream 48075 58267668 ~ 58267950 (+) True G526625
TU596782 lncRNA downstream 51036 58270629 ~ 58271477 (+) True G526627
TU596796 lncRNA downstream 65783 58285376 ~ 58285687 (+) True G526639
XM_021607019.2 mRNA upstream 59931 58151840 ~ 58158582 (+) True LOC110526232
XM_021607011.2 mRNA upstream 274829 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 282247 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 297443 57916345 ~ 57921070 (+) True fgf3
XM_021607009.2 mRNA upstream 354757 57851759 ~ 57863756 (+) True LOC110526223
XM_036980592.1 mRNA downstream 703 58220296 ~ 58228939 (+) False LOC110526234
XM_036980593.1 mRNA downstream 703 58220296 ~ 58228939 (+) False LOC110526234
XM_036980589.1 mRNA downstream 2563 58222156 ~ 58228939 (+) False LOC110526234
XM_036980586.1 mRNA downstream 8814 58228407 ~ 58236139 (+) True LOC110526233
XM_021607030.2 mRNA downstream 16667 58236260 ~ 58243576 (+) False LOC110526235
TU596687 other upstream 105694 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 400233 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 508173 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 576031 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 590894 57621848 ~ 57627619 (+) True fbxo3
TU596784 other downstream 52486 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 99327 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 559130 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1552115 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3752143 61971736 ~ 61979527 (+) True LOC110526282

Expression Profile