RNA id: XM_021607030.2


Basic Information

Item Value
RNA id XM_021607030.2
length 2356
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110526235
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58236260 ~ 58243577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAACACACGAGCAAAGATCAACTAACAAGACAGACCATTTGCCCATCAGCGGTCACAgactgaaagagggagagagtgatgaagACCAGTTATTTATTTATAATATTTATATGCATCCCTGCAACCCTGAGAACCAATGACAATCTTCCAAACTGTAAAGATGCTCTTCGAGATTGTCTTCGCACCGAAGTGGTGTGGACCAGGTGTTACGAGGATAGAATTGCAATATGCATTCCAATGACCAGAATGGCCAtcccaaacttctacagatggtCTGTCAACTCATCCAATCAGGCAGAAGAGAGCACGAATTCTGGACACAGAGTGCACATTCCTGCACATGCTCTCCAGAGAAGCAAGAGGAACGACTCTATTAGCACTGACTATGTGCAAATTACAATGGCTGTACTCAACAGCTCTCTATTCAAGCTTAGCCCGGTTCAAGGCTCTAGATCAGGGGAAGTCCTTGGGCAGTCTGTGCTGGCTGTGAGGGTGGGGGACCACAGTGTGAGTGACCTTGACCAGCCTGTCAGAATCGccttcagaaacacaaatgtGACTGAGAGAGGGACTTGTGTTTTCTGGAAGGACTCAGAAAATAAGAATGGCGAAGGGGACTGGAGCTCAGAGGGTTGTATTACCACCCTCATTCACGGAGAGTTTGTGTGCAGCTGTAACCATCTCAGCTTCTTTGCAGTGCTTGTGAACTCAAATTTGTCGGTAGACCCTGTGAATGCTGCCAACCTCGGCTACATCTCCTACATTGGTTCATCATTCTCTGTGGTTTTCACCACAGTAACCCTTGTCATGTACACTTGTCTTAGGAAGGGGCATTCTGAACAGTCAATATCCATTCATGTGCAGCTGACAGGAGCGCTCCTGTTTCTACACCTCTCCTACCTCTTGAGCGAGTGGTGGGTGTGGCATGAGGCTGATGGGGCTGAGGGACATGTCTGTCTGGCCTTTGGGTTGATACTGCACTGGGCTCTCCTGTCCACCTTCACCTGGCTGGCCATTGAAGGCTTCCATCTCTACATGCTGTTAGTCCGCGTCTTCAACATCTATGTCAGGAAATACCTGCTCAAACTGAGCCTGGTTGGATGGGGCATACCCACTGCAACTGTGATGGCCTGTCGTTTCTCAGGAGTCTACGGCATACATAGCTTCTACATGACGGGGGCCAATAACGGCTCATCAACAGACATATGTTGGATAAGCAGTGCAACAGACAGCcctggagtcgtggtcagctacATCACAGTGAGTGGATACCTGGGCCTGGTCTTCCTCTTCAACACAGCCATTCTaagtgtggtggtggtgaagcTGTGGGGGCAGAGAGGGAAGGGTAGGATGTGGAAGGACTGGGCCACGGTCCTGGGGCTCAGCTGTGTGCTAGGAGTACCATGGGGGTTGGCATTCTGCACCTACggccccctttctctccctggaCTGTACCTCTTCAGTATATTCAACTGCTTCCAGGGTGTCTTCTTGTTCCTGTGGTTTCTTGCCCTTTCACGTAAGGGCCGCCCAGAGCACTCCTCTGTGAAAGACTCTTCCAGTCAAAAGATGATGGAGACAAACTTCAACTGATACTGTGGGACTTGCAACACATTCCAGCATACCTTTTAATAGTGTTTGCAGACCAAGTCCTGAGTATGAAACAGCGGGGAAAGTATAATTCATTTCTTCCTGGTACGGACCTCTTTTCCGGAAAAAAATGTATGGGCCTAAATATAGAATTGCATATAGAATCCCTATCAATTCAATAGCATTTATCTGGGCCTAGTGGTAAAGATTTGACatgaaacatttcaaatgtatgACCTTTTATTATGGCATCAACAAAACATCATCATGATGTTTTAATCAGCTTGTCAAACATCGGCCCCTTTACTAGGCTACCCGAGCAACGTTTATCCACTCACAACATACTTCCAGCCCCCAAACAATggtgaattgagagagacagctgttacacaaaacaccaaaaagtgtcATGACATTTGGCGTTTGTATTTAGGCCAGAATATATGCGTCCACTGCTGTCTGCGTGCGTCTTGGTGTCGGCCACTCATCTCTGCCGTGGCATAATTTCAGTGTTTTTGCATGACATTTTGGAGCATAGGCACCACCTGTTTTCATGTCCATTTGCAAAATGTTCATGCCTCTGCCAAGCGGtaataataaaaaacatttaaaatttCAATTATTGTGATATATTGTATTTTACCAGTACAGCAAACCCTCGCTATTTATTTTGTGGGGACACCGTACCAGACCGTACCAACTTTCAACTTTCACCCCTGGTGTAAACATGACATTTATGATAAAGTGTGACACATGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596648 lncRNA upstream 16667 58218513 ~ 58219593 (+) True LOC110526234
TU596758 lncRNA upstream 24926 58211120 ~ 58211334 (+) True G526609
TU596757 lncRNA upstream 25456 58210523 ~ 58210804 (+) True G526608
TU596754 lncRNA upstream 25956 58210003 ~ 58210304 (+) True G526607
TU596753 lncRNA upstream 26744 58209284 ~ 58209516 (+) True G526606
TU596651 lncRNA downstream 5477 58249053 ~ 58256834 (+) True G526511
TU596779 lncRNA downstream 23692 58267268 ~ 58267483 (+) True G526624
TU596780 lncRNA downstream 24092 58267668 ~ 58267950 (+) True G526625
TU596782 lncRNA downstream 27053 58270629 ~ 58271477 (+) True G526627
TU596796 lncRNA downstream 41800 58285376 ~ 58285687 (+) True G526639
XM_036980586.1 mRNA upstream 121 58228407 ~ 58236139 (+) True LOC110526233
XM_036980591.1 mRNA upstream 7321 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA upstream 7321 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA upstream 7321 58219554 ~ 58228939 (+) False LOC110526234
XM_036980592.1 mRNA upstream 7321 58220296 ~ 58228939 (+) False LOC110526234
XM_021607033.2 mRNA downstream 16927 58260503 ~ 58263649 (+) True LOC110526238
XM_036980595.1 mRNA downstream 100569 58344145 ~ 58408967 (+) False LOC110526933
XM_036980596.1 mRNA downstream 210872 58454448 ~ 58505295 (+) True LOC110526241
XM_036980598.1 mRNA downstream 397078 58640654 ~ 58732690 (+) False LOC110526245
XM_036980599.1 mRNA downstream 397078 58640654 ~ 58732690 (+) False LOC110526245
TU596687 other upstream 123441 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 417980 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 525920 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 593778 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 608641 57621848 ~ 57627619 (+) True fbxo3
TU596784 other downstream 28503 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 75344 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 535147 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1528132 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3728160 61971736 ~ 61979527 (+) True LOC110526282

Expression Profile