RNA id: XM_036980595.1



Basic Information


Item Value
RNA id XM_036980595.1
length 3297
RNA type mRNA
GC content 0.56
exon number 9
gene id LOC110526933
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58318920 ~ 58408967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTCGCTTCCCCACTCCGCTAACGAACCTCCACTTCCCGAGGAAAAATTCCTGTAGGAAGAATGACGTGAAGACTATCGAAGAGAGAATAGCGACTTCTACCCGACACATATCGCATCAAGTGGCATTTAGAATAAGCTGAACTTGTGCCATTATAAAAGGTAGCCAACTGAGTAAAGATGACCATGCACTCCTGAGTGCACAGCATCGCTCGTGTTTCCTGCTTTTTCCTGGATCATCATCGGCTCAGTGATGAACCACACCCCTAGCCCCCACATGGCCGAGGCCGCTAAGTCCGGGGCGGGCCTGCTCTGTGGCCTGGGCCTGGGGCCGGACAGGGTCCGCTCTCCTGATAGCCTGACCCACACGCCCAGCCCCACGGGGGGCACCCCCAGCTCCAGCCCTCCTCTGCTGCTCTCCCCTGGCCTGGGCGAGTCTGGGGACTGGGAGAGCCGTGAGGAGCTGCGTctgagggagctggaggaggccAGGGCGCGAGCTGCCCAAATGGAGAAGACCATGCGCTGGTGGTCGGACTGCACAGCCAACTGGAGGGAGAAGTGGAGCAAGGTGCGCTCCGAGAGGAACCGGGCACGGGACGAGGTGCGGCAGCTCCGACAGAGGCTGGACGCCCTGACCAAGGAGCTGACAGGCGCAAGGCGGGAGCGGCAGGAACTGGCCTCCGAGAACGAGACACTCAGACAGGAAGCACTGTGTCTCCGTGCTGACCAGGCCTCACCCTCCCACGCCCCCTCAGCaccaccttcctcctcctccaccccatcctcctcctcctcacagcccCTTGTGGACAGTAAGCAGGACAGGGTGGGCGAGGGGCACGGGTCACCAGAACAGGAACCAGTGAGAGATGTGGACACAGATAAACCTGACAGACAGAAGGAGCTGGAGCTGTTGGAGTCCGTGCTGAGGTCCAAGGCGGAAGGTCCAGACTCGTGGGACGCCCGTAGTGCCAGCAGCCTGCGTTCTGCCCTGAGTCGTCAGGACCGCAGCCGGCTGCTCTGGGATGACATCGCTGCCATGGAGGAGGACCCCGGCAAGATCAACGCCCTCCAGCTCCGCCTCGACGAATCACAGAAGGTCCTGCTCAAGGAACGCGAggATAAGCATGCACTCAGTAAGAGCATAGAAAAGCTGGAAACAGAGCTGAACCAATGGAAACTCAAATACGAGGAGCAGAACAAGACCAAGCAGGAGGCCATGAAACAGctcaacATGTTGAAGGAGGTACACCAGGATGAGTTGGGTCGTATGTCTGAGGACCTGGAGGATGAGCTAGGAGCACGCACTAGTATGGACAAGAAACTGGCCGAGCTACGAGCAGAGaTGGAGCGGCTGCAGGTGGAGAACGCTGCCGAGTGGGGCCGGCGGGAGCGCCTGGAGACCGAGAAGCTGGCGCTTGAGAGGGACAACAAGAAGCTGCGGGTGCAGACGGAGGACCTGGAGGAACAGCTGGCCCGTAAACGGCGGCAGGCGGCCAGTGCCCTGGACACTGACCTCAAGACCATCCAGACTGAGCTGTTTGAGAGGAACAAGGAGTTGGCAGACATGCGCCACATCCACTCCAAGGTGAAGAAGCAGTACCAGGACAAGATGGCCGAGCTGGCCCACGCCAACCGGCGGGTGGAGCAGCACGAGACAGAGGTGAAGAAGCTGAGGCTGAGGGTGGAGGAGCTGAAGAAAGAACTGGGTCAGGCGGAGGACGAGCTGGATGAGGCCCATAATCAGACCAGGAAGCTACAGCGGTCTCTGGATGAGCAGGTGGAGCAGTCAGAGAACCTCCAGGTTCAACTGGAACATCTGCAGTCCCGACTGCGGCGGCAGAAGAGCCCGGGCCTGTTTGGGAAGATGAGGTCAGCTCGGTTCAGCCCGGAGAACCCAGACGGACCGCCCAGCGAcccagacgaagaggaggaggagctacAGATCCAGATCCCATGAACAAAGGAAGGACACACGGACTCTGACTTAGGGCCTCTTCATTTCCCACCGTGTGAGTCCCGTAGACAGACGGACTGATAGTTGGACGGCTGTGATCTTGACGCCTACTCATCTCCATTGACCTGGCTCATCCTGGTAGAGACAAACACTGGCACATGGTTGCCATGGACACCTGTCACCCCCTGTACCTGTGAACTACAGCGCTGCCAGCAGGGGCCCAGAGGGAGCCCTCGCTACACGACGACtgacagtacactacactaccacactccAGTACAACCCACAGTGCACTGCGGTTACGAGCCACCACGGCCTGAGCCTACAGTCCTCTAGCTCCCTACACCTCAACCGTCATTACCATCGCTCCCATATCTTCAACACCCGCGGTGTTGAGAAACGCTCTCTCATTCGCACTCCTTAGGCGATTGCTCACGCCTCCTCTTTCACCCTTCCGTCCCTTTCTCTTTGCGTCCCGAGTTCCTTCACCCAGCAAATGTTGTACAGTATCCGTCCTGatgtataaaacatgtaaaaACCACTCCAGAAAGGGACGGTGACCTAGCTGTGACGTTCCAGCAGTGTTCTGGTAATGTTATGTAATGCGTTTGGATTTGTGTCGTTAGCTGTACATACAGTTCAGTACAGGTAGGGCGTTTGGCCCTCGGGTCACTGTGCTATGGGTGTGTGCTCGGCGCCTGGCACCTGGGGTCGTCATTACTTCATCAGTGTTTTGGGCTCAGCCTCAGACAGCTAAATCCTTCCAGTGTTCTTGGGAGAGACTGGGACTGGATATGAAGTCCCTTCCCTGCTATGTCCCCTTGTCCCGTCACCGTAACCACGAAGGGACAAGGTACTTGTGTAGAGGACGGGTCCGTTAGACCTACAGTATTAACTTCTCGACATAGTGGGTTGTTCATTCTGAAAGAGAAGTTTGTGGTCAacacacacatccttaaaaaaagCGTAGGTGCCGGGCTGATTAAGTATATTATAGAAAAGAACAGAAAAGGGCCTGCACACTGCACGGTTTTGATCTGGAAGGATCTTCGTCAGGCCAAGACCCTTGTGGATCGAAACGTTGTCAATGATGTGGTAATTGGGAGCATATTCAGTGTGCAGGCCTTTCTGTTCAGTTCATTCTGAAAGCAATAAGACATCAGCTATCACTCCCACTTACTCATCTGCTACTGCCGGGACCAAGTTATTTGTAACGGTCATGCAAATTATTTATGTTGATGTTTTTGATAATTGATCTGTACTGTGAACCACAGTGTTTTTTTGTATTTAGCTCTATAAATGTTAAGTGTACGTATAAACATTGCGTTGTTTGTCTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU596806 lncRNA upstream 38546 58305280 ~ 58305599 (+) True G526649
TU596805 lncRNA upstream 39407 58304496 ~ 58304738 (+) True G526648
TU596798 lncRNA upstream 51572 58292234 ~ 58292573 (+) True G526641
TU596797 lncRNA upstream 56742 58285932 ~ 58287403 (+) True G526640
TU596796 lncRNA upstream 58458 58285376 ~ 58285687 (+) True G526639
TU597166 lncRNA downstream 1151 58410118 ~ 58410438 (+) True G526991
TU597170 lncRNA downstream 3374 58412341 ~ 58412592 (+) True G526995
TU597196 lncRNA downstream 22935 58431902 ~ 58432180 (+) True G527020
TU597204 lncRNA downstream 27652 58436619 ~ 58436823 (+) True G527028
TU597253 lncRNA downstream 100706 58509673 ~ 58510015 (+) True G527075
XM_021607033.2 mRNA upstream 80496 58260503 ~ 58263649 (+) True LOC110526238
XM_021607031.2 mRNA upstream 100568 58236260 ~ 58243577 (+) True LOC110526235
XM_021607030.2 mRNA upstream 100569 58236260 ~ 58243576 (+) False LOC110526235
XM_036980586.1 mRNA upstream 108006 58228407 ~ 58236139 (+) True LOC110526233
XM_036980593.1 mRNA upstream 115206 58220296 ~ 58228939 (+) False LOC110526234
XM_036980596.1 mRNA downstream 45481 58454448 ~ 58505295 (+) True LOC110526241
XM_036980598.1 mRNA downstream 231687 58640654 ~ 58732690 (+) False LOC110526245
XM_036980599.1 mRNA downstream 231687 58640654 ~ 58732690 (+) False LOC110526245
XM_036980601.1 mRNA downstream 231687 58640654 ~ 58732690 (+) False LOC110526245
XM_036980602.1 mRNA downstream 231687 58640654 ~ 58732690 (+) False LOC110526245
TU596784 other upstream 71309 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 231326 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 525865 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 633805 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 701663 57639474 ~ 57642482 (+) True LOC110526214
TU597653 other downstream 369756 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1362741 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3562769 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3740806 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 4411453 62820420 ~ 62822616 (+) True G532259

Expression Profile