RNA id: XM_036980596.1


Basic Information

Item Value
RNA id XM_036980596.1
length 4156
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110526241
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58454448 ~ 58505295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCGCTCCGTACAGCCCTATACAGTCATTGGTACAGCTCTGAGCAGCGCCAGCCGGACTGGACAGAAGAGATCGCCGCCAGTTCTCCGTGAAGAGCGAATCACCTCGGCGCGTTCGTCACAAATAAAACCACACAGCCAGAAGGCAGCCTATTCTACGTCGATTCATGGAATTATTGTCAGGTGGCGTAGGTTGCATTTATTACCAATTCAGTTCGATAGTTGTGGCTTCTACCCATCCTGCCTGAAGGTCACAAGCGGAGCCGCTCAGCACCGACCGCCGCGCCCCTTCAGGACTTCGTCACCCAGGGACTGCAACGAAAGGACGATGGGGGACAACGAGCTGAAATAGAGGAGTGAGCGCAGTCTGAGGGCAACAGGATCTGAAAAGGAAGATTTGGCTGATATAGAGGAGGGAGAAGGTAACCCCAGGACttaagagggaaagaggaggggagggaggggggttagGTGCAGAGCTGGACTGGAGGACAGAAGGACTGGATGCTAGCCTCAATAGGCCCCAGCAGGTCCCAGCTCCCACAGAGATGGCCTCCAACTTCAACGACATCGTCAAGCAGGGATACGTCCGCATGCGTAGCAGGAAACTGGGGATTTACCGTCGCTGCTGGCTGGTGTTTAAGAAGTCGTCCAGTAAAGGACCACGCAGACTGGAGAAGTACACTGATGAGAAGTCCGCTTACATCAGAGTCTGTCCTAagGTGACAGAGATCAGCAATGTGAAGAATGTCACAAGGCTCCCAAGGGACACCAAGCGCCAGGCGGTAGCCATCGTCTTTACCGATGACACCTCACGCACGTTCACCTGTGAATCAGAGCTAGAAGCAGAGGAGTGGTTCAAAACTCTGTCAATCGAATGCCTGGGGACCCGCCTCAATGACATCAGTCTAGGAGAGCCGGACTTGCTGGCAGCAGGTGTTCAGTGTGAACATACAGAGCGTTTCAATGTGTTCCTACTGCCCTGTCCTAACCTGGACATCTATGGGGAGTGTATGATGCAGATCACCCATGAGAATATCTACCTGTGGGACATCCACAACCCTCGCACCAAACTGGTTACCTGGCCTCTCTGCTCCCTGCGCCGCTACGGACGAGATGCCACGCGCTTCACCTTCGAGGCTGGACGGATGTGTGACAGTGGAGAAGGCCTGTACACATTCCAGACGCGGGAGGGAGAACAGATCTACCAGAGAGTCCACTCCTCCACCCTGGCCATCGCTGAGCAGCACAAGAGAGTTCTGATGGAGATGGAGAAGAACAGCAGAtTGTCTAAAGGTTCTGAGGCGAGCTCCTACCCCTGTACCCCCACAGCCATCCTGCCCCGCAGTGCCTTCTGGCACCATATCACTGGCACCCAGGGGGGCATGGACCCAGCCCATGgtgACATGTTTGGTGGTTCTCAGACTGGCGCTGATGCAGACCTGCTCTCCACCCGGCTGCCCTCAGAGCCACGCCACGCTACCATGCCCCTGGCACACAGCCGACACTCCCCCGCCCGCTACCCCACCTACCCCAGCCAGTGATCCCAGGGGTGCATTGCAGACCCCTAGCCTCCTCCACTCTATACACCGCACTCCTCCTATTCTCCTTTCTCTGCAGTGCTTACCTCAACTCCACGCCCCCTCATCTACCCTCCAGCCAATCAGGTTGGGTTGTGGGGAGTGGGCTCTAAGATGGGGTCATAGGACCTCCCCTAAAGCTGGGAGCTCTGTGAAGCAGGACGTGACAGCGCCTCTGgtcttctcttcttcttccaaAGGCTGGTTACCTGAAGGAACTTCAACTCACGGTGGGGGCAAAGTGCATTGTGCGAGCCAGCAGTGGCTTGTTGCCTCTTAGTGAGCTGACATTGTGGCATGGTGCATCTCTCTTTGCTCTGCTGTGGGTgtggaggaggaacaggaggagaatGGGTGTGAGCTGTAAGGATGTGATTTagtctcctctctaacccctgtgAAATCTTATTTTCTGATGGGATTCAGTCAGCTCTCCATCATCTCAACCCCCTTTGCGACAGACCTCTTCATGTACCTcatgccagctcttagcaaagtTCAATGTTAGGGGCTCAGGACGTCCCCATACAGCTCTTATTGGGGGCAGAACAGTAGGACCCCTTCCTACCATCCCTGCTCTCCAGCATGATAAGGATTGTGGCGCTCGCTCCAACCCGTAACCTCAATCTGACAGACACATATGTAAGACAACAGTTTCTTCCCAAGTACTGGCCTTGGCTTCCTTCTTCAACTATGTGTGGGTGGAAGAGGGACTGTCCCTGGACTACCATCCAAACAAACACCTGGTCTAATTCCACAGAGAAACAAAGGACCAATTGTCTTTCATCtttctttctttaaaaaataaacttGTAGCAGACTTAACAACCTGACTTTACCTTGTATACTGTTCTGTCTGATAAAGAAAATAGACAGATTTTtctgggaggatagagggaggcagtgatgagagggagggagagccatATGCCTCTGAAGTCATGACTTCGTTTGTTGTTTTCTCCTGGTTTCCTGCCATTGGGTTGTGAAGACATCCAAGGCTGTTCATAATATGGTAATGGAACCCTgtcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgcatgaATGGGATACACAGTTACTGTCATTTGGCCACTTTAAAACCTATGTTAAGAGAGAATTTAGACATGGTAAAGAATAAGctagattttttaaaaatatagacGTCACAAAGATGTAGCCACTCCCTCAAACCTCATCATTATTGTGGAGGTCCTTGGTCTGAGGGAGACACCACGGACTGTGTCATAGTGTGGCTCCTCATTGAGTTTCCTGTCAGGCACAAGAGTATAATGAACTAGTGAAGTTGTGATAACCATTGTTAATGTCCCGTGTTTGTAGCTTCACAGACTTTCTGGTGTGTGGGGGTGGGTTATCGCCTGACCAAAATGGTTCTTGACATGTTTGCACttgtttttttcccttcttttaaaaaaaaaaggtgtttTTGATAAATCAGGAGCCATTGCTCTTAATTTGGGTCATGTGAGGGATAAGCACAGATCTAGGGCGGGTCCATAAGTTACCTGCCTCAGAGACCCTCACATGGAGTCCTTTCATTTTAGGGGTGTAGCCTAGATACTGCTAGTGGGTTAGTTAGTAGATGACTGTTGCACAAAGAGAGAAACACATGTTTATATAGCTGGAAGTATAAAACCTGCCCTCTACACAGTTCTTACATAAGATTGGGTTTATAACTAATAAGGCTAATTATATCAACCCGTCGCAACATTAGCAGATTTGATTGACTATGAAGTAAGACTTTCCAACTGTGTATTCATTTGTGACACTTGGATATGACCCAACTAATACCACCATGTAGTTAGAGATTGGACtaatatgaaatatatatatacagtatttcaccACTGTTAAAGTTATTATATGTGAAGCTTATAAAATGAGGTAATTTTCTAATCTCCGTGACTAGGTGTAATGTTATTTATTTGAGTTGGCCAGAGTGGGACAGTCTGATGTCTAAGGCTACTTGTTAAATGCTGGAATCCAATAAAACACACATTTACAGCTTATTTATCTCATGTTAACATAAAGGGCTAAGCTTTTTGTTGAACATAATCTTTACCctatgtatttgtgtttgtgtacatACATGAGTTGTTGTTGCTGCCCCCTTGGGCTCTTGAAAATACAGCTATTTATTTCACATCGTGTGGTCTCTAGATGTgcgtgtttgtgagagagagtgtgcggTGTATGGCTGAATGTTCTGTGACAGGGATTGTCTGGGGGACGTTTCTTTGAAATGCATGCACTCTACACATTTTTATACTGCGTAACGATGGTAAGATTGAAATGTTGTGGACTTGTTCGTCCAGATATGTGGGTGAAGACTTTTTTTTTACAGACGTTTACTTGGCACAAGGAAATAAAGAACAACGATTCACCTGAT

Function

GO: NA

KEGG:

id description
K24037 DOK4_5_6, IRS5_6; docking protein 4/5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597204 lncRNA upstream 17625 58436619 ~ 58436823 (+) True G527028
TU597196 lncRNA upstream 22268 58431902 ~ 58432180 (+) True G527020
TU597170 lncRNA upstream 41856 58412341 ~ 58412592 (+) True G526995
TU597166 lncRNA upstream 44010 58410118 ~ 58410438 (+) True G526991
TU596806 lncRNA upstream 148849 58305280 ~ 58305599 (+) True G526649
TU597253 lncRNA downstream 4378 58509673 ~ 58510015 (+) True G527075
TU597254 lncRNA downstream 4913 58510208 ~ 58510632 (+) True G527076
TU597284 lncRNA downstream 6243 58511538 ~ 58511760 (+) True G527104
TU597285 lncRNA downstream 6643 58511938 ~ 58512177 (+) True G527105
TU597294 lncRNA downstream 22826 58528121 ~ 58581884 (+) True G527113
XM_036980595.1 mRNA upstream 45481 58344145 ~ 58408967 (+) False LOC110526933
XM_021607033.2 mRNA upstream 190799 58260503 ~ 58263649 (+) True LOC110526238
XM_021607031.2 mRNA upstream 210871 58236260 ~ 58243577 (+) True LOC110526235
XM_021607030.2 mRNA upstream 210872 58236260 ~ 58243576 (+) False LOC110526235
XM_036980586.1 mRNA upstream 218309 58228407 ~ 58236139 (+) True LOC110526233
XM_036980598.1 mRNA downstream 135359 58640654 ~ 58732690 (+) False LOC110526245
XM_036980599.1 mRNA downstream 135359 58640654 ~ 58732690 (+) False LOC110526245
XM_036980601.1 mRNA downstream 135359 58640654 ~ 58732690 (+) False LOC110526245
XM_036980602.1 mRNA downstream 135359 58640654 ~ 58732690 (+) False LOC110526245
XM_036980603.1 mRNA downstream 135359 58640654 ~ 58732690 (+) False LOC110526245
TU596824 other upstream 82480 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 181612 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 341629 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 636168 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 744108 57703458 ~ 57710340 (+) True G525912
TU597653 other downstream 273428 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1266413 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3466441 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3644478 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 4315125 62820420 ~ 62822616 (+) True G532259

Expression Profile