RNA id: XM_036980600.1


Basic Information

Item Value
RNA id XM_036980600.1
length 2896
RNA type mRNA
GC content 0.59
exon number 16
gene id LOC110526245
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58640654 ~ 58732690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTGCTCAAGCCGCAGCACAGCCCACTGCCTCTTCTCCAATCACCGGTAGCCTCGCGCTCCCCGGGTAGGCCTACTCACCAACCTACTGTCTCACATTTTGATACATCACTCCGGCGCTATTACCTCTCATCAACCCAACTCGATTTTTCCTTGCTATCCGAAGATGAGAGTGTACATCGCGGTGCCCTCTGCATGCTTTACCTCCTAACTCGGGCTCTAGACCCGCAGctgggaccagagagagagtaacctctctcttctctcatcatcactcGCTTGGTGTTCTACGGACACGGGGAGCGAGCCGACAGTCGACCACAATAATTGTACCGTATTTGTGTATAATTTCTCTTTCTCGTCCTCATCCTGTCTTTCACGCTGGGCacagacagggaaggagagaagacCAAGGCTTCGCAATCGCTATTTCTACCGTGGAAATACATTTGGTGGGGTTTTGTGCCCTGTCCGTATTTGGTGAACCCTGGATTTAGTGAACATGGAGACGGTGGAGAAGGAGTGCGGGGCGTTAGGTGGACTATTCCAGGCGATTGTCAATGATATGAAGTGTTCATACCCAGTGTGGGAAGACTTCAGTGCCAAGGCCACCAAACTGCACTCCCAGCTCAGgACCACAGTGCTGGCAGCTGTGGCCTTCCTGGATGCCTTTCAGAAGGTGGCAGACATGGCCACCAACACCAGAGGCGCCACCAGAGACATTGGATCAGCTCTTACCAGGATGTGCATGCGGCATCGCAGCATCGAGGCCAAACTGCGCCATTTCACCAATGCTCTGATGGAGAGCTTGATCACTCCTCTCCAGGACAGGATTGAGGATTGGAAGAAGACCGCCAACCAGCTGGACAAGGACCATGCCAAAGAGTACAAGAGATCTCGCCATGAGATCAAGAAGAAGTCCTCAGACACCATGAAACTGCAGAAGAAGGCCCGGAAAGAAATCCAGGGCCGAGGGGACCTGCAGCCCCAGCTGGATAGTGCCATGCATGATGTGAATGACATGTACCTGCtgatggaggagacagagaagcaGGCGGTGCGCAGAGctctggtggaggagaggggacgcTTCTGCACCTTCATCGGCTTCCTGCAGCCTGTAGTGAATGGAGAGATTGCCATGCTGGGAGAGATCACTCACCTTCAGGCCATTATTGATGACCTCACTGTGCTGACCACTGATCCCCACAAACTGCCCCCCGCCAGCGAGCAGgtgaTCAAAGACCTGAAGGGTTCAGACTACAGCTGGTCCTACcagacccctccctcctcccccagcaGTTCTGGCTccaggaagagcagcatgtgcaGCAGTGTGAACAGCGCCCACAGTAGCGCCTCCCGCTCCTCCGGAGGCTCTCAGACTCACTCACCCAGTTCGTCCTATCGCTACCGCAGCCTGGCCCACCCGCCACCGGGGAACGCTCACCGCCTCAGCAGCGTCTCTTCCCACGACTCAGGCTTCATTTCGCAGGACGCCAACGTCTACTCCAAGCCTCCCTCGCCCATGCCCTCTGACATCACCAGCCAGAAGTCGTCAAGCTCTGCATCCTCAGAGGCATCCGAGacctgccagtcagtcagtgagtgcaGCTCTCCCACAACGTTTGGCTCGTCCTTCGCTACCTTCCgccctgctctctctcacactggcTCCATCAGGCCTCTCTCTGTCATACTTCCTGCGTCCCCACCCTATAACTACTCCCCTGGATCCAACACTACCTCTCCCACATCAAAGGTTCCTTGCTGGAAGGATTGGTCCAAGGCAGGTTCTTATGAGCAGCCATTGGCTGCCACGCTTCAGCGGAGGAAGGAGCCCCTGGATAGGCTGAAGGAGAGCGAGGCATCCCCGGGCTCCCAGGGATATGCTGGTGCTCACCCAGACGATGTCCAGAGGTCCCGAATGACCCCCGCCACCATCGCTGCCAAGCACGGCGAAGAGGTGTCTCCAGCAGCCAGTGACCTGGCCATGGTCCTGACCCGTGGTCTCAGCATGGAGCAGCAGAAGAGCAACAGGGACTCCTTGCAGTACTCTAGTGGCTACAGCACCCAGACCACCACACCCTCCTGCTCCGAGGACACTATCCCCTCTCAGGggTCGGATTATGACTGCTACTCTGTGAATGGAGATGCTGAAGGTGAGGCGTCAACTGACTTTGACAAGTCCTCCACCATCCCCCGCCACAGCAACATCGGCCAGAACTACCGACGCATGATCCAGACCAAGAGGCCGGCCAGCACCGCTGGTCTGCCCAGTGGGGCCCAGGGCGGAGTGcttggagggggagggggcattGGGACCCCTGGGACTGCCACCATCCGCCGAACCCCATCCACCAAGCCGGGTGTGAGACGTACCCTGTCCAACGCGGGCCCCATCCCCATCCGCCCGCCTATAGTGCCAGTGAAGACACCCACGGTGCCTGATGCTCCTGGGGGCTACCCCGGGCCTCCGGTACGTGTGGGCAGTGAGGAGTGTGTGTTCTACGTGGCGGATGACTCCTCCCCCAACGTTTTGGAGTATGTGAAGGCCTCTCCCAAGCGTCTGAGCCTGCCCAACACAGCGTGGGGGTCTGGGGGAGCGATGGAGATGAGTGTGTATGTCCAGCACGGCTCTGAGGAGGACCAGATGATAGCCGCTAACCGCCACAGCCTGGTGGAGAAGATAGGAGAGCTGGTGGCCAGTGCCCATGCCCTTGGGGAGGGACAGTTCCCCTACCCCAACCTCCCTGATGACCCCCCGCCTGGCCCGGCCCCCCAGCATGACCCCCAGGCCCCCGGGTCAGGCACCGACGTGCTGGTGTCCATCCGCAGGGGCGTGCGGCTCCGCAAGACCGTCTCCAACGACAGGTCTGCGCCCAGGATTTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597339 lncRNA upstream 40536 58597812 ~ 58600119 (+) True G527157
TU597294 lncRNA upstream 58771 58528121 ~ 58581884 (+) True G527113
TU597285 lncRNA upstream 128478 58511938 ~ 58512177 (+) True G527105
TU597284 lncRNA upstream 128895 58511538 ~ 58511760 (+) True G527104
TU597254 lncRNA upstream 130023 58510208 ~ 58510632 (+) True G527076
TU597596 lncRNA downstream 13116 58740500 ~ 58740805 (+) True G527393
TU597647 lncRNA downstream 45968 58773352 ~ 58773630 (+) True G527444
TU597649 lncRNA downstream 47874 58775258 ~ 58775494 (+) True G527446
TU597650 lncRNA downstream 49299 58776683 ~ 58777182 (+) True G527447
TU597654 lncRNA downstream 51985 58779369 ~ 58779600 (+) True G527451
XM_036980596.1 mRNA upstream 135360 58454448 ~ 58505295 (+) True LOC110526241
XM_036980595.1 mRNA upstream 231688 58344145 ~ 58408967 (+) False LOC110526933
XM_021607033.2 mRNA upstream 377006 58260503 ~ 58263649 (+) True LOC110526238
XM_021607031.2 mRNA upstream 397078 58236260 ~ 58243577 (+) True LOC110526235
XM_021607030.2 mRNA upstream 397079 58236260 ~ 58243576 (+) False LOC110526235
XM_036980609.1 mRNA downstream 87099 58814483 ~ 59000538 (+) True LOC110526935
XM_036980612.1 mRNA downstream 615735 59343119 ~ 59376681 (+) True tshz3b
LOC118965037 mRNA downstream 1116244 59843628 ~ 59847586 (+) True LOC118965037
XM_021607061.2 mRNA downstream 1123778 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 1440121 60167505 ~ 60175549 (+) True LOC110526261
TU596824 other upstream 268687 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 367819 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 527836 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 822375 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 930315 57703458 ~ 57710340 (+) True G525912
TU597653 other downstream 51339 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1044324 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3244352 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3422389 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 4093036 62820420 ~ 62822616 (+) True G532259

Expression Profile