RNA id: XM_036980616.1


Basic Information

Item Value
RNA id XM_036980616.1
length 8201
RNA type mRNA
GC content 0.51
exon number 8
gene id znf536
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59507092 ~ 59698393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGGGACTTCTGTCTGGTTATATACAGGATTTGATATCATCTCGATCAATGCGATGATGTGTCCCATGGTTCGAGGACATTTTGAATAATCAATCCGTCTGCGTTTGGCCGAACCATCACCGTCCTCCTCTTTGTCGACCTCTCCACGTTTGCTCGCTCTTATCATCGTCCCAGAGTCACATGCCCTTACATTCTAGAAAACCCAACCGTCCATAGTAGTATTTTATACTTTTTATTATTACCAAACCGTTCCGATATTTACACCATAATCATTATATAATCCCATAAGAGTCTATTTAAGCAATTGCTTCGTCAACGCCGGAACACTGAAACTATAATTGCATTATATACCGCTCCTTCCACCACCTAGAGAAACATCATATATCAAACCATCTTGGTGCGAACATTTAGGAGAATGAAAGGTCGGCCTGTGCATCTCTGTCCTACCGCAAAAGTTATGCCAAAAAAAGTTTAGAGTCCTCGACGAAGTATACAGCTCTTTAAATCATTTCCCCAGGTTACTTGGAACCGTTGGGTGAGCGCGTTTAATATTGGacttttctctttctgttttaATAAGGTACGACGTGGCCTTGTTGAACCGCTTGGTTGTTTTAAATATCATATTTACTAATAAATATGTTTAATTCCTAGCCCATGGCTTCAAAAAGCGCTCCCATGCATGTTGTTAGAATAAACCTGGTTCGTCAGGGCACCTGAAAAAAAAAGCCTCCCTCAGGACCAGTTTGCGTTTGTATGCATGCGATTGGCAACATAACTGGCTTATTTACATTAAATACGCCACAAGGTTACAGTGAGATGAACGTCATTTTATCACTGATTACTTCTCTTAAGCACTAGAGCTGTGACTGATGCTCAGGACGCGCAGACTACACCGATTTACCCTGGAGTTGTTTGGGGGAAGAAAAATACTTGAAATAGTTAACTGAAAAGGCGCTTGTCTTCCCCCCCTCTGCAAACCTGTCTGTGTTCTTCCTGAGCTACGTCGGTGAGGTGGCAGTACTGCAGTGATCTACGGATGTCAATTAGAAGACCCAAAGAAAACACGTTAGGACAGAGACACATCCCTCTAGGTCGGTTGTCATTGCTGTGTGCTGTAGTGACTCAGTGGCAGTGACTGCCTGGGTCTCCTCGAACCAAACAGACAGGCTCCAGACCAGTATGCAGTTAGTGTGTTAAGGATGGAGGACTCTAGTTTGTGCCTTGGTGTGTCTTCAGCAGTATCGGACGCTgacagagaccatctgagcaacACAGTGCTTAATGGCCGATACCCCATCAGTCAGAAGCTCCACCAGCTGACGGCCCAGCTGGGCCACGCCTTTCCCGACCTACAGAGCCGACAGCAGATCCCTGAGGAGAAAGCTGCCACCCCATTGGATGAGAAGAGCCACGCTGCCCTGGCCAGTCAACCAATCAGCAGTCAGATGGCACTGCTCGCTAACCAGCTCAACCGGGACATAGATGCAAGTGCCCTGGCCAACCTGAATGGGCGTGTGGACCTGCAGCAGTTTCTCAATGGGCAGAACCTGGGCATCATGTCCCAGATGAACGACATTGAAGATGATGCCCGCAAGAACAGGAAGTACCCTTGTCCGTTGTGCGGCAAGCGATTCCGCTTCAACAGCATCTTGTCGCTACACATGCGCACACATACAGGTGAGAAGCCTTTCAAGTGCCCCTACTGCGACCATCGAGCAGCACAGAAGGGTAACCTCAAAATCCACCTACGCACCCACAAGCTGGGAAACCTCGGTAAGGGACGCGGCCGTGTCCGTGAGGAGAACCGTCTTCTACATGAGCTGGAGGAGAGGGCCATCCTGAGGGACAAGCAGATCAGGAGCAGCAGCCTCCTTCAGCCAGCTCAGCCCCTGCAGCACCAGCCACACCTTGGCCCTCagacccagcagcagcagcaacagcctGGCTCTGCCTGTGGCCTCCTCACCCCCACCTGCCTGGGAACTCCAGACTCCCTCTCCCAGCCGTCATCCTCCCCCAAGCCGGCCAGCGCCCAAGATGACCAGGCCCTGAACCCACCCACTGGATTCCGCTGCACCTTCTGCAAGGGCAAGTTTAAGAAGCGGGAGGAGCTGGATCGTCACATCCGCATCCTGCACAAGCCCTACAAGTGCACCTTGTGTGAGTTTGCTGCCTCGCAGGAGGAGGACCTGATCAGCCATGTGGAAAAAGCCCATATCACGGCCGAGTCAGCTGCGGGACAGGGTGCAGCTGGCGGCACTGAGAAGCCTGCCAACGAGTTCCGCTGTGAGGTGTGTGGCCAGGTCTTCAGCCAAGCCTGGTTCCTCAAGGGCCACATGCGCAAACACAAGGACTCATTTGAACACGTCTGCCAGATCTGTGGTCGTCGCTTCAAGGAGCCCTGGTTTCTCAAGAACCACATGAAGGTCCATCTCAATAAGCTGGCCATCAAGAGCAAGCCCCCAGCAGAGGACATTAATGCTGTCAACACCATGAACAGCATGGCCCAGGAGGCCCATGCTAACCTCTACTCACGCTACATCTCCTGCCTGCAGGGCGGCTTCCTATCCCCAGACAAACAGGGTCTGAGTGAGCAACACCAGATGCTGGCCAAAGCCGGCATTGCCATGAAGGAGAAGGAGATGCTGGGGAAGCTGCTAGGCCCCATGGCAGGGATGGGCCATGGCCTTGGTGAAGGGGAGAAGCGCTCTCTCCTGGGCTGTCTGAACCTGGTGCCCCCCCTGAAGTCCAGCTGCATGGAACGCCTCCAGGCGGCTGCCAAAGTTGCAGAGATGGACCCGCTGAATAGCTATCAGGCCTGGCAGATCATGGCACGAGGCATGGCCATGGACCGCACCTTTATGCCCAAGGAGCAGCACCATGAGCAGCACCATGAGGAGAGGACCAATGCTGCTGGCATGGCCTTCACTAAAGAGAAGCATGACTACCCTATGATGGGCTCCAACGATGGCTCCAAGCAGAAGCAGCACATCGAAGCTCTGCATGGCTCGAAGGCCGGCAGTGGAGCCATGATGCCCATGAAAGACGACAGAGTGGGTTTCGACAGCCACCGTGACTTCATGCCACATCATGGCGGCCATGGCCTGGGCCTGGGCCACGGCCTGGAGTACAACCACCTGACTAGCCTGAAAGAGAAACCCACAGAGTGTCCTGACTGTGGCCGGGTCTTCAGGACCTATCACCAGATGGTGGTCCACTCTCGGGTGCACAACAAGGAGCGGCGGCCCATAGAAGAAGCCATCCAGCAGCAGAACAACACCACAGGACTGGATGAGCGGCGTGGCTCGGCCAGCGACCCAGAGTCCCAGTCCATCAGCAGGTCCACCACCCCTGGATCCTCCAACGTGACAGAGGAAAGTGGAGCCGGAGGAGGCCACTCCCAGACCGGCAGTGTCCAGGACGACAGCCCACACCCTTCCTCCCCATCCTCAGATGTCGGGGATGACCTGGGGAAGACGGCGGGGAGTGTTCAGCAGGCCCCCTCCCAGCACAGGGACAGGAGCCTGGGCTCGGCCATCAAGGACTGCCCCTACTGTGGGAAGACCTTCCGCACCTCCCACCACCTCAAGGTCCACCTGAGGATACACACAGGAGAGAAACCCTACAGGTGCCCTCACTGCGACTATGCAGGCACCCAGTCTGCCTCACTGAAGTACCACCTGGAGCGCCACCACCGTGAGCGGCAGAATGGCGGCGGCCCCTCCTCCGGACATGCCCCTCTCTCTGAGCACAAGGAAGAGCACGGCAAGGGTGGCGTTTTCGCCCGCCCTGATGTCCTCCGCGGTGTCTTCAAGGGCATGCCCTCCAGCCTGGACTTCAGAGGGGGACCGTTGCACCCCCACCAGTGGGCCCCTCCCGGTATGTTGTCCCCCAGGGAgcgtgagagggacagagaacgaGAACGTAATGGCCTGGGATCTGACACTCTCTCTGAAAGCATGAAGAGCCCAGAGGGCCCCTCCGCCGCAGACGTCCCAGCCAGCTTCAGAGACCTAGGTCGGGCGTACCAGAGCATGGTGGGAAACGGTGTCAACTTCCAGGGCTCCCTGCAGGCCTTCATGGACAGCTTTGTCCTCAGCTCcctgaagaaggagaaggagatgagagagagccaCCTGCAGTCCCAGCATTACTTTGAGAGTGGTGAGCCCAAAGCCAAGAGGGCTGATACTGGTGAGGAAAAGGCTGAGGCCAAGCCTTCAACGGGCAAGCCTGGGTCCCAGTACGAGCCTCTGGACCTGTCTGTCAATGTCAAACCTGAAACAGGCTCTCTGCCTGGCTCCTCTGTCACCTTCCAGGACAACGTGGCGTGGCATGGCTGCCTCTTCTGCTCCTTCACCACTGCCTCTGTCGAGCTGATGGCCCTACACCTGCAGGCCAACCACCTAGGCAAGGCCAAGCAATGCAAGGAGGGCAAGGAGCACCAGGGAGAGCCCTCCCACTTCCTCAAGGCCAGCATGGGCCCAGCCCACCTCCATGACAGAGACaatgacagagagggggagaagagccagtcagcctggtCCAACCACATGGAGCCCCACGCCAGCATGGGAGCCTTCCAGAGTGACTTCTATAAGCAGTATGGAGGCATGTATGATGGCTCCCCAAGGACCCCGGGCCTCCAGGGGTTTGGAGCAACATGCCCTGACCCAGCCCTGGAGCAGCAGAGCCAGGCCAGAGAAACAGCTGGGGATGAGCTCTCAGacaaggcctcctgcggggagcTGGAGGACCAGGCACAGTCTGAGGATGATGAAGGCAGGGATGGAGAGCGCTGCCACAGCACCGAGTCCTCCTCCGCCCAACCAGGGAGACAGCGACCCCACTCTGacgacgaggaggaagaggaggaagaggacgggATGGAGGGGGAAGATGAGGACAGTGCCACCTATCAGATGCCGAAGCAGACGCAGGCCGTGTCCCCGGCTAGAGAGGCCCAACGACCAAGGGCCTCCTTGGGCCCTGGGGCCCCTTTCCCTCCCCAGTTCCAGCCTCAGCCGCCCCTGGAGAAGCAGTGGCAGCAGGGCTTGGGTCTCCTTTCATCTCCTGGTGGTTCCCCGGGGCTGCTGAAGCCGGAACATGCCCATCTCGAGCAGCAGATGAACATGCTGTCCGTCCTGAGGGCCTACAGCTCGGAGAACCTCGCAGCGTTCAACGGCCTTGGAAGCGGCTCAAACAGCGGCGTCGGCATCAAGAGACCAGACGCACCCAGTCACGGAGGTCAGGGGGGTCAGAAGCCGTTCCAGTGCAGGTACTGCTCCTACGGTGCCTCTCAGAAGGGCAACCTGAAGACCCATGTCCTGTGTGTCCACCGCATGCCCTTTGACAACAGCCAGTACCCTGACCGCCGCTTCAAACGCTCCCGCATCGACTCGGACACCTCAGGGAACTCTGAGGATGGGACCACCAGCTATCCCACGGGAATTCATGGGGGTACGGCcgacccccctctctctggggACCCCCTGCGTCCATGACCGATGTCACCTGGCGTGGAGGTGCCAGCCTTCAACTCTACAACTACTGTACTCACTAGAGCCACATAACAGGGACTACTTACTTCGCCTACTCCCAGAGCACAGCCAGATAAAGGGGGCCATCAGTGACTGTACTGTTTTACCCAGAGCTCACAGGACATCCTCAGTGTGTACTAGGTCAGTAACAATGACATAACATGCATATAAACAACACATACCATGGGTTGAGTATTCCTTAAGATGGGTCCTGAAGAAATGCATCTATTCATTCATTTAAAACTAGGTATAGATATGTTAAATTTAGTTATGCGACAAATAGTGGAGACgactatataaaaaaaataataataaaggaaATATAGAAAATCTTTAAAATGACTTTTATCCCCCCAAAATTATGCTTTTATCCGAAAAATTATCCCATAAACGATTTAGCGACAATTGGGGAAGATGGAATAGGATTGTTGAACACACCCCTCAGAACATGACACCGGCGGCTGCCTTTTGCAGAGGGCGAATGATGAGCAGCCAGTGGAGACTGGGGCAGGCAGCGGCAGTGGTGGGGGGGCCTTGGTGCCAGCCTGACTGGAGCTGTCATCGCAGAGGAAATCAATtcaatcccccctctcccctttttTCATCTTTCTCGACCCAGCAGTCCAGCCCCATCCACTCCCAGCCCTCTGCCCCTACTGCACTACAGGAGTAACCTAACCCTGGCCGACATGTGAGGGGTCAAACTCAGTTCCATCAGCTGGCCAGAgtcaccctcctccccctcccctttctctgccTCTTTAAAACGACTCAAATCCAACATGGCCtctggaagaagaaaaaaaaatcaatgATGTATTTAAAGGAGCCATTAGAGGCACAGAGATGTTTTCTGTGCAATATTGTCATTTATTTGGATATCACCTTACCAGAGACTGAGAGGTGGAGTTAATTGaatgtgttttatttcatttaacttttatgttaggaggtggatggtTGTTCTTTGGAATTGAAAGTATAGCTAGTGAAGATGTACATAGTGGAATTGGGACCTTTACAACTTGATGTGCTGTAACTTTAGTCAGAGGTTGAATGTTTTGTTATATATGAAGACCGTGAACGTCACAGGACTTGTTTCCTCAGACACGATGCAGGACTATCTTCCTATAGGCTCCTCTAAAGCAGCTTCAGAATGAGCAATAATACATAGAGATAATCACCCTGCTCCCTGTCTCTAATTTAAACGTATTAGTTACAAAATAGACAAAGGGACATTTTCTACAAATGTCTTTTACAATTTATTTCTAGGTTTCGGACGAAGCATTTTGTGAGTAGTGGGGGGTAAAACAGAAGATGATGCTTTTTATTGTGTTGGTATGGAGGCATGGGgggggattaaaaaaaaaataattctgataAAGAGAAATGATCCGGACTTAAAGAAAGTCAATATCTTCCCTCACAGCCAAGGAGAGCTGAACACTTAAACCCCAGGGCCTTAACACCACAGCTATGCCTAAAGGAGTTTACAGTCCGCTCAAATACACTGCTCCTATcagttgagagagagaaataagaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagtatGGATATGTACAGAATGCAGTTGTGGTTTAAATGGGGTCATTTGAATTAGGACTTTTCTGCCATTCAGTGATCTACTTACAGTGTTCATTTGCTTACCTAGCCTAGTTCGCACTGCCTTACTTCAGATCGAGTCGATCAATTTAATACAACTGTTTGTATGATATCTCCCATGAAGCCACAACATTGAGATACAACTGAAACGACTGTGGTAAGCTTTAGGTTTAAATGCACTACTGCGTTCTTGGTGACTGTGCCAGTCGCTTGCTTTTtcgtgtgtgtatgtacgtacgtgtgtgtgggtgtgcctaCCTAACTATATAAGAGAAAATAATAACTACAAAAAAAACTACAAAAAATAAACTCTGAAGAAAAATAATTCACATTCCATTTCTAGCACTTTTCAGGTTTTCCAGTATATCTGTATGTTTCAAACTATGCGAAAAGGCAATGATGCTTTTCATGACACTGGAAACATCGTTGTTTGCCAATTCTCTGTGACGTGTTCGTCCATCCCTTACTGTGCTACTGTTTCCCTGCCTGCATTCCAAAATAACCCACGTTTTCCCTGAAAATATTTTGTTTGTCATGATTCAATTAAGAAACAGACGCAAAATGTACAATTACAACTTGATCATCCCTGCGCTAACAAAGAAGATAAATAATTTCTATGTACTTCTCTGTGTACTCTGTGTTCATGGCCCTGATACTGTCCACATTCCTTGATGAAGTAAATGTCAATATTGGAGGTAAAGTAAGTAGAGGATTTTGTTGCTACTACTATATACTTACAACCAGTAGACAACTTTGTATTTAAATATAACTATTGGGCATTATTTATTATTCTACATCAGTTTTACAGAAGAGGAAAACAATTCTGATAACGGTAAatctacgtttttttttttttttttcatggacTCTTTCTGCTGTCAGGAAGTTGTGAAGTCTCTGAGGCAGTTCGTTTTATCCAGTGTTTTACGCAATAAAAACCTCTACCTCTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU598543 lncRNA downstream 29018 59477854 ~ 59478074 (-) True G528292
TU598508 lncRNA downstream 54917 59451964 ~ 59452175 (-) True G528257
TU598505 lncRNA downstream 55682 59451071 ~ 59451410 (-) True G528254
TU598434 lncRNA downstream 127768 59379097 ~ 59379324 (-) True G528188
TU598399 lncRNA downstream 165020 59340882 ~ 59342072 (-) True LOC118964913
TU598925 lncRNA upstream 80754 59779141 ~ 59779553 (-) True G528666
TU598926 lncRNA upstream 81545 59779932 ~ 59780240 (-) True G528667
TU598943 lncRNA upstream 92999 59791386 ~ 59791660 (-) True G528684
TU599022 lncRNA upstream 147563 59845950 ~ 59846261 (-) True G528758
TU599027 lncRNA upstream 153490 59851877 ~ 59852238 (-) True G528763
XR_005052175.1 mRNA downstream 164988 59316805 ~ 59342104 (-) False LOC118964913
XR_005052174.1 mRNA downstream 164988 59322554 ~ 59342104 (-) False LOC118964913
XM_021607055.2 mRNA downstream 446597 59049218 ~ 59060495 (-) True LOC110526251
XM_021607053.2 mRNA downstream 466335 59005106 ~ 59040757 (-) True LOC110526249
XM_021607052.2 mRNA downstream 466336 59005106 ~ 59040756 (-) False LOC110526249
XM_021607060.2 mRNA upstream 141043 59839430 ~ 59844236 (-) True ccne1
XM_021607065.2 mRNA upstream 149249 59847636 ~ 59850901 (-) True si:ch211-260e23.9
XM_021607067.2 mRNA upstream 164385 59862772 ~ 59864489 (-) True LOC110526258
XM_036980618.1 mRNA upstream 168064 59866451 ~ 59869316 (-) False pop4
XM_021607068.2 mRNA upstream 168064 59866451 ~ 59870055 (-) True pop4
TU597652 other downstream 728625 58777782 ~ 58778467 (-) True G527449
TU597073 other downstream 1248116 58258552 ~ 58258976 (-) True G526903
TU596948 other downstream 1352176 58151850 ~ 58154916 (-) True G526784
TU596913 other downstream 1525301 57981467 ~ 57981791 (-) True G526752
TU596897 other downstream 1544359 57955408 ~ 57962733 (-) True ccnd1
TU602531 other upstream 2815736 62514123 ~ 62558399 (-) True LOC110526302
TU603357 other upstream 3124518 62822905 ~ 62855007 (-) True G532766
TU603354 other upstream 3153309 62851696 ~ 62852817 (-) True G532763
TU603463 other upstream 3287142 62985529 ~ 62990278 (-) False LOC110526310
TU604146 other upstream 4125512 63823899 ~ 63825525 (-) False igdcc3

Expression Profile