RNA id: XM_021607061.2


Basic Information

Item Value
RNA id XM_021607061.2
length 2258
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110526256
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59851162 ~ 59861646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAACAGGATGTGGGCTTGTCCTAAACGAATGTCCCGTCATTCACCGCGGtcctatttgttttttttttataccacCGCTCATTATACACAAACAGTTACACATCATCAAAGTGCGAGATCTGACGGGAGAGAAGCTACAATGTCTCCACGTATGGATGATGTCATGCAACTATGCTGTGACCTGTCTGCAAATCAGCAGATAAAAGCAGCAGTGAAGAATTCTGGGAAAGGATCAGCAGTGGCAGGAGGGACTGCATTTTTAGGAGGTCTTCTAGGTGGTCCCCCAGGGATTGCTGTTGGTGGTGCAGTAGGTGGCCTGTTGGGATGGTGGATGACCAGTGGACAGTTCAGACCTCTCCCTCAGATAATCATGGAGCTGCCTCCCCACCAGCAGCAGAGGCTCTATGCTGATATCATGGCCGTTTTGGGCTCACTGGACTGGACAGACCTGGCCCAGCTGACCGCTCTGGTCATAGGGAATGCTACTCTCCAGCAGCAGGTCACTGCTGCCCTACTCAGTTATATCACAAAGGAACTGAGAGCAGAGGTGAGATATGGGGACTGATCTACACAGACTGAATATCTGGAGGAACTTAAAACACACATTTGCTGCCTTTTGAAAGAAACAACTTTTTGTACTCAAATTCAACTCCAGCTTATTTTTGGAGACTGAAATAACCTTCACTGGAAGAGGCCTTATGGAGTTAATACATTGAGGCTCATGTCAGACCTGTCATGTCACCCAATATCTGATCATATCCTTTGATAAAGCACCTAATGGACAATTCCATCACTTTTTCACGTGATTTTCATTATCTCCAGAccaataccagtgtctacatatgtgaacATGGCACATTTCTACGTTTTGCAGAAACAAATATGAAGTCAAAAGTTCTACCCAATGACATCATCCAAAGTTAGAACATATttaaaaacagtgattttcaaacacttTGAGACTCGCAGTGACGTGAGGAGCAAGAAAATACCCTCTGGCTAGAAACTTTTTTTGAAAATCACGGTTTTGTTACTTTTACTCCTAGCCTGTTatgtcacagagaagcattttttttatgacctttcttatttttttaaccaCAGATCCTAAAAACACGCTGTTTTTACATACTGCATGTAGACACTAGTATGGCGCTGGAGATGATGAATGTGAGGTggaaaagtggtggaattgccctttaatgtacacatttgttttgttttagatGAGAGCGTTTTACCTCTGAATGTAGTGGTATGATTGAAACTTCTCTTGTAAGAACAGTCCAGCAGTTAATCAATATGGTGCACTTTATTTGTACTGTAGGGCATCATTTGTTGCCAATATTCTGCACTGAAATGTACACGTTGAATATTGTTGTGCATTTATAATTTACATTTATTTGCAACAAAGACAATGACAAAATAACCCTGATCACTCCTCTTGTAAGTGTGCCTGGGATCTCAAGCGACTCATGCGTTGTGAACATGGTAAGAGATGAGTACTTCTGAGAAACCGGCCTTGATACTTCTGGCGCATAATGGTGATAAGTCCCACCTAGTCCTAGAATTAACTAATTGGGAAAATCTTGGACACTTTTTGTAATGCTCTGTACTGAAGTGTTTATATGAAAATCATGATAAATTAAGTAAAGGTCAAAGATGACTTGTATGATCACCACAAGCTTTTAGTATGACATCATTAAGCCAGAAAACATGTTGTTTCAGTGAATCAACTGACAGTTTCGTAAAGGGAAATTCAACCACTTAACACGTTATTTGTAAGAAAAGGAAGACAATGCTACGCAATGTAATCTCTCCTGGACAGATGCATGCACGTAACAGAATGGTATCTCATCTGACGCAATTACGCAGTATTTTTGTTCTGGCTTTCTGAAATGGTACGCAATGTGACATAGTTCCTCTTTTTCAATGTTTCAAATGTAGACTTTTGAATAACACTAGAATCTTAAGGTATCAAAGCACTTTTTGAAGTATGTGCAAAGGTTGTTTGTCATGATGCCTCtgtgcatttttttattttcattttttttcctaGATGTTCCTTCCTTGTTCCTTCTTTGCAAGCAAATGTAGTCATGGAGGTTGTCATAACATCATACAGAGAAAGATAGATTATTAATCTCGAGGATAAATTTCTTAAGAAGTTATGTCATTCATTTCTGAGAGATGGTTGTTAGTCTTGTAGGAATGGCTTACTAATAAACAGTTTCATCGCAGCTTTTTCAAATTCCAA

Function

GO: NA

KEGG:

id description
K23168 MPAN; protein MPAN

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU598990 lncRNA upstream 6966 59842580 ~ 59844196 (+) True G528728
TU598964 lncRNA upstream 44424 59805938 ~ 59806738 (+) True G528705
TU598932 lncRNA upstream 65604 59785349 ~ 59785558 (+) True G528673
TU598924 lncRNA upstream 71710 59779229 ~ 59779452 (+) True G528665
TU598922 lncRNA upstream 72665 59778255 ~ 59778497 (+) True G528663
TU599069 lncRNA downstream 35147 59896793 ~ 59900613 (+) True G528802
TU599258 lncRNA downstream 172426 60034072 ~ 60034297 (+) True G528986
TU599325 lncRNA downstream 218523 60080169 ~ 60080372 (+) True G529052
TU599793 lncRNA downstream 543991 60405637 ~ 60405856 (+) True G529500
TU599795 lncRNA downstream 544576 60406222 ~ 60406430 (+) True G529502
LOC118965037 mRNA upstream 3576 59843628 ~ 59847586 (+) True LOC118965037
XM_036980612.1 mRNA upstream 474481 59343119 ~ 59376681 (+) True tshz3b
XM_036980609.1 mRNA upstream 850624 58814483 ~ 59000538 (+) True LOC110526935
XM_036980607.1 mRNA upstream 1118472 58640655 ~ 58732690 (+) False LOC110526245
XM_036980620.1 mRNA downstream 305859 60167505 ~ 60175549 (+) True LOC110526261
XM_021607074.2 mRNA downstream 568555 60430201 ~ 60432307 (+) True LOC100653452
XR_005052179.1 mRNA downstream 586960 60448606 ~ 60452270 (+) False LOC110526265
XR_005052180.1 mRNA downstream 586960 60448606 ~ 60452270 (+) False LOC110526265
XR_005052181.1 mRNA downstream 586960 60448606 ~ 60452270 (+) False LOC110526265
TU598912 other upstream 79078 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1072145 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 1479194 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 1578326 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 1738343 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 2110090 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 2288127 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2958774 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 3150612 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 3171285 63032931 ~ 63198734 (+) False G532237

Expression Profile