RNA id: XM_036980620.1


Basic Information

Item Value
RNA id XM_036980620.1
length 1674
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110526261
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60167505 ~ 60175549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCTTTCTGATATACGTAATTTCGTCACCTGACGTGTTGCGTAATCAACCAGCGCTTGTTCCCCTTGCACAGTCTAGACAAGgtcgtagctagctagcattgcaAGGAGCCTCTCTCGCTAAAAAGATGATGTCCCTTGCCGCTCGTTCGGGGGTATTTTCTCCATACTTGCAGGCTACGAACTATGCAGTTGCTGGACCCCTCAAAGCCCTTATTCCAGGGGTGGTTGTAAAAGGAGAGAAAGTGTTGGTAGACACGAAGAAACCTTTCCTTACCCGCGAGTCCCTGAACGGTCAGAGTCCAAAGACTGGGCCTGCAGTATCAGTTAGCATAAATGCAAAAGCTGCAGTCCGATTCGCTCACACTGACATCAAGGTGCCAGATTTCTCTGATTACCGTCGGCCTGAGTTGCTTGACCCCAAGAAATCTTCTCAGGAGAGCAGCGAGTCCAGGAAAACCTTCTCCTACCTTGTCACCGGGGCCACAGCCGTGGTTGGTGTCTACACAGCCAAGACCGTGGCCACACAGTTTATCTCTTCCATGAGTGCCTCAGCTGATGTCCTGGCCATGTCCAAGATCGAGGTCAAGCTGGGAGAGATCCCAGAGGGCAAGAATATGACCTTCAAGTGGAGGGGCAAGCCTCTGTTCATCCGCCACCGGTCTGAGAAAGAGATCGCCGCCGAGGAAGCTGTGGATATGGCTGAGCTACGTGACCCCCAGCACGACAAGGACCGCGTCGCCAACCCAAAATGGATCATTGTTATTGGCGTGTGCACCCACCTGGGCTGTGTACCCATCGCCAATGCTGGTGACTATGGTGGATACTACTGCCCCTGCCATGGCTCTCACTACGATGCCTCTGGCCGTATCAGGAAAGGCCCAGCCCCACTCAACCTTGAGGTGCCCTTCTATGAGTTCCCAGATGAGGACACAGTAATTGTAGGCTAAATTTTTGGACTGAGATCACAGATCAGTGTGTTTCTGTCTGGCTCATTATTCCATCCATTAGCAGGCACAACCTCTGTTTCAGGGTGGCATAAATTATTGTAAGtaataaatgtacattttatcTGATTGAAAACCTCTCATGTTATTTATTTACCCAATCTCAGCTAAATCTTATATTGTACCAAAATACGACCTGGGTTGTAAATGAGTAGTGGGGTTTCTTTCGCCTTTCTTAACATGGAATAGCCTACTAACAATAATGATGTTTTAATAGTGCAGGTACAAGGGGATTGACCAAGACTTTGCTGCTCAATCAAAAACGTACACCTGCTTGCAGACAGTTGCCTACAATTGTGTCCGGAGGTGATTCTAAAGGGTTAATGTCATGAATGATGGCTTTACGTTCAGTTTCAGAGATATCCAAAATGGATATTGGATATTGTTGGGATGATTTAGAGTGCTAGGTTCAGTTGTTTAATGGCGATATTGATTTTCTAATCAATATCACTGTTTTGCTTTGGTGGTGGTCACACAGATTAACATTACACATTCTATACCAGAAAGAAAAGTGGTCAGTGGGTGCTGACAAGGGCATTGTTTAAATTGATGCTAATGCAACAGAACAGCCAGATTACACTTTTGTATTAATGAGCTATCCATCTGTATACAGAGTTATGTACAAATGCATGCTCATGTTAAGctaataaatgtttcacagaaaATCA

Function

GO: NA

KEGG:

id description
K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599325 lncRNA upstream 87133 60080169 ~ 60080372 (+) True G529052
TU599258 lncRNA upstream 133208 60034072 ~ 60034297 (+) True G528986
TU599069 lncRNA upstream 266892 59896793 ~ 59900613 (+) True G528802
TU598990 lncRNA upstream 323309 59842580 ~ 59844196 (+) True G528728
TU598964 lncRNA upstream 360767 59805938 ~ 59806738 (+) True G528705
TU599793 lncRNA downstream 230088 60405637 ~ 60405856 (+) True G529500
TU599795 lncRNA downstream 230673 60406222 ~ 60406430 (+) True G529502
TU599797 lncRNA downstream 231173 60406722 ~ 60407035 (+) True G529504
TU599799 lncRNA downstream 232140 60407689 ~ 60408096 (+) True G529506
TU599817 lncRNA downstream 245253 60420802 ~ 60421066 (+) True G529523
XM_021607061.2 mRNA upstream 305859 59851162 ~ 59861646 (+) True LOC110526256
LOC118965037 mRNA upstream 319919 59843628 ~ 59847586 (+) True LOC118965037
XM_036980612.1 mRNA upstream 790824 59343119 ~ 59376681 (+) True tshz3b
XM_036980609.1 mRNA upstream 1166967 58814483 ~ 59000538 (+) True LOC110526935
XM_036980608.1 mRNA upstream 1434815 58640655 ~ 58732690 (+) False LOC110526245
XM_021607074.2 mRNA downstream 254652 60430201 ~ 60432307 (+) True LOC100653452
XR_005052179.1 mRNA downstream 273057 60448606 ~ 60452270 (+) False LOC110526265
XR_005052180.1 mRNA downstream 273057 60448606 ~ 60452270 (+) False LOC110526265
XR_005052181.1 mRNA downstream 273057 60448606 ~ 60452270 (+) False LOC110526265
XR_005052182.1 mRNA downstream 273057 60448606 ~ 60452270 (+) False LOC110526265
TU598912 other upstream 395421 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1388488 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 1795537 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 1894669 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2054686 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1796187 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1974224 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2644871 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2836709 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2857382 63032931 ~ 63198734 (+) False G532237

Expression Profile