RNA id: XM_021607074.2


Basic Information

Item Value
RNA id XM_021607074.2
length 1712
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC100653452
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60430201 ~ 60432307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTCAGCTTAAACAACTTTACCATGCTATTGAAGTTGGCTGGTTAAGCTAATATAAAAATTAATAAAAGTAGGGACAATGCAACCCGAATCTTTATTACTGGGTGCTGGAACTTCCATGGCCGTCACTTCGCATTGGAAATCGAATGAGATGCTCAACTGGTCTGTGGTTACCCAGGGAAACGCCACGGCGCTTGGTGATATGGAGATGCCTGGGAACCCACGTTCGCAATATGGACAATTCTCTCCGTCTACCTCCGTGTTCTTGGCCGTGCTCATGACGCTTCTTGTCTTCGCCACTGTGCTCGGCAACGCGCTTGTAATATTAGCCTTTGCGGTGGAGAAAAGTTTGCAAACTCAAGGGAACTTTTTCTTTTTGAATTTGGCTATAGCCGATTTACTCGTTGGCGGCTTTTGTATTCCTGCGTATATCCCCTATGTCATTACCGGTGAGTGGCGACTCGGACGAGGTCTTTGCAAGATATGGCTGGTGGTGGACTATACTTTATGCACTGCATCAGTGTTCAACATCGCCCTGATCAGCTTCGACAGATTTATATCTGTCACACGAGCGGTGAGCTACAGGTGTCAAAAAGGTGTGACCCGGGAGGCTGTTCTGAAGATGCTGAGTGTGTGGCTGGCTGCTTTCCTACTCTATGGGCCAGCGATCATTATCTGGGAATACATCGCTGGTAGTAGCGTGGTGCCCGACAAACAGTGCCACGCAGAGTTTTACTTCAACTGGTATTTCTTGATGACAGCATCCACTGTTGAGTTTTTCACCCCCTTTGTTACTGTCATGTACTTCAACATCAGCATCTACATCAACATCAGGAGGCGGAACCAGGTGAGGGATGAGCAGCCTGTCGAGGGGCCTGGGGACTGTGAGATGGAGGCCCTGAAAGCTGGAGTTCAGCATGTATTCTTCGTCAGACCAGTGGAAGGTGAAGCCCAAAGGATCCCAGACAATGCTGCCAGGTTAGGAGGTATTCTATCTACTGCTAAAGTGTCAGCAGTAACTGGGAACAGCAACCATGAGACATGTAAGGACAGCACGATTCTGGACCTTCCTCCACTGCAAGTGGGTGATGTGGTTCAGCATTCCAGGAGGACGCGGTTCCAGTCAGCGGAGCACTCGTTCAGTAAACAGCGCAGCCAATCTGAAGTAGCTGCCAGTCGTTTTCGTCTCTCAAAGGACAAGAAGGTTGCCAAGTCCCTGgcagtgattgtgtgtgtatttggccTGTGCTGGGCTCCCTACACACTGTTAATGATCATTCGTGCAGCATGCCATGCCCAATGTGTCCAGCACTACCTGTATGAAATCTCCTTCTGGTTACTGTGGGTCAACTCCTCCATCAACCCTGTCCTTTACCCGCTGTGTCATACCAGCTTCAGAAAGGCTTTCAGAAAACTGCTTTGTACCACCAAGATTAAAATTCAGCCACAGTATATGGAACAAATGTATTAAGCATGACCAAATTGCACTGACAACTATGGCCTTGTTCTGACAGTTTTACATAATCAGTTGTCTCATGATGTTAGTGTAGGCGGACAGGTCATACGAGTGTTGCACTGGGTACAGACGGTCACCATgaatattgttttgtatttctgtgtagcATGTGCTTGTTTGCAGATCTTACAACGTGTATTAGTTACCTTTACAAATGTAATGTCTGTTTTATGTTGAACAATAAAAGACATGCAGC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004969 histamine receptor activity molecular_function

KEGG:

id description
K04151 HRH3; histamine receptor H3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599819 lncRNA upstream 4373 60425506 ~ 60425828 (+) True G529525
TU599817 lncRNA upstream 9135 60420802 ~ 60421066 (+) True G529523
TU599799 lncRNA upstream 22105 60407689 ~ 60408096 (+) True G529506
TU599797 lncRNA upstream 23166 60406722 ~ 60407035 (+) True G529504
TU599795 lncRNA upstream 23771 60406222 ~ 60406430 (+) True G529502
TU599822 lncRNA downstream 522 60432829 ~ 60435307 (+) True G529528
TU599859 lncRNA downstream 46384 60478691 ~ 60479017 (+) True G529559
TU599861 lncRNA downstream 49669 60481976 ~ 60482185 (+) True G529561
TU599862 lncRNA downstream 51955 60484262 ~ 60484462 (+) True G529562
TU599870 lncRNA downstream 59950 60492257 ~ 60492474 (+) True G529570
XM_036980620.1 mRNA upstream 254652 60167505 ~ 60175549 (+) True LOC110526261
XM_021607061.2 mRNA upstream 568555 59851162 ~ 59861646 (+) True LOC110526256
LOC118965037 mRNA upstream 582615 59843628 ~ 59847586 (+) True LOC118965037
XM_036980612.1 mRNA upstream 1053520 59343119 ~ 59376681 (+) True tshz3b
XM_036980609.1 mRNA upstream 1429663 58814483 ~ 59000538 (+) True LOC110526935
XR_005052179.1 mRNA downstream 16299 60448606 ~ 60452270 (+) False LOC110526265
XR_005052180.1 mRNA downstream 16299 60448606 ~ 60452270 (+) False LOC110526265
XR_005052181.1 mRNA downstream 16299 60448606 ~ 60452270 (+) False LOC110526265
XR_005052182.1 mRNA downstream 16299 60448606 ~ 60452270 (+) False LOC110526265
XR_005052178.1 mRNA downstream 16339 60448646 ~ 60452270 (+) True LOC110526265
TU598912 other upstream 658117 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1651184 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2058233 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2157365 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2317382 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1539429 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1717466 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2388113 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2579951 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2600624 63032931 ~ 63198734 (+) False G532237

Expression Profile