RNA id: XR_005052178.1


Basic Information

Item Value
RNA id XR_005052178.1
length 3052
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110526265
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60448606 ~ 60452270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actttgtggctttaATAACTAGTGAAGACCCGCTTCCCTTTCCACTGAATCGCCCGCATTGGCTGAGCCGAAAACAAAGTGTGGGAATACGTCTCCCATTGGCTAAATTACTGTGTGCAGTAGTGTTAGCGCAAATATTTAGACGGAGATCCAATTACTACAATGTGATATAGGTAAATATATTATGAGTAGAACATTTGATGCTGAATTCCTTTCGTAAATAAATATGCTGTTGTTATTTTCAGCAACAAGTACGCAAACAGACGTCGATGGCTGGTAGGCGTGGTGGTGTCTGCCAATTTTGACGCGAAAGGCATGTTTTTGTGCGATAACTCGATTGGAGAAGTTTGCTTTTTACTCTCTCGTTGGCAGTCACGAACATTAGTTAGTTAGCggaaattgaaaatgaaatgtctACTAAACTTGCATCTAAAATGGGTATAACCTCTGCAAGAGTTTTACGCCAAGCAGATGAGTACGTGCGGTTATCCCTGGTTAAATGTACAGGACTCGGAATTACGACGGGTACAAGTAAAGCAGTAATTTGCCTAGAACTGGTAGCAACATCAATGAAGTTTCCTCTGGACAaaGAATATGACTTCAAATTATCCGGGTTGAACAAGAAGCAGTATCAAAGCAATCTGAAGGCCTGAGATTGAATGCATGCTTGGCCTCGAATCTCACCTAGGAGTCGGAGACCTTACTGTTCAGTTTGGGTGCATGGATGcaatcaaagtagccacccagaACGGTATGAAGCAAGCCTTCCTGCTGCTCAGTAAAAAGATGTGGACCTGTCAAAACCACTCTTCACTACAGCTGCTTTGAACGCTGCATGCGAATGCTTGAAGATCAAAGTGGATAGGAAGCTGTTAGCATCATCTGGTGCTAAAAAGGGAATCTTTGACAGGCTGTGCACCCAGTTCCAGAAACTGGGACAGGACATCTGCAGTAAGTCTGCTGTTAAATTATAAAGGGGTTTGACTAACATATGGTGGGAAATGGGTGAAAGCCCAGGGAGGGCCTTTGGatttaaaaatgtacttccaagCAATAACGTTCTGTTGACTAACAATACCTTTTTTTGTGACATACGCTTCCGAAAGCTGGGGTTTGAAATATTGTGGCCTTTTTCATAGTGGCTATTTGTACTTTTGCCCCTGGTGTGTGGGTTTTTACTTTCCTGGGTGAAAAGAGAATCTAGgtcattcctctctctcattgTTGTCGTGGTTACCGCCTGGTGGGAGAGAGTGGATGTTCTATTTTAGGACTGAAAACTTCAGTGAGTTGGTCTCCCAATCAGGGATGTCCGGATCGCGGCATACAACATGCCTATTACAATCAATCTCAGAATGTCGTAGCTATGATCTTTAAGTATCTCTTGATATTTCTTTTCCCCAATGGAAGAAGCCACTCCACTGAAGAATCTAGTTAAAATGGCACAGAAAAGACGAACACTCATAGAAAATATAGAACAAAGAGGAAGGTAAGTGTGACCAAATAATAACCATACCAAATTCCTGATTATGTCCTTAGAAAAGTGTAACTCTTAATCTTTGCTGTATTGCGGGGTTAAAacggtgttgggggggggggatattttgTGCTGTCTATCAAGGCCGACGTCTCAAAAGCAGCAGAAAGAGGACTCTGAGGAGTGCGCTACACAGGATTACGAAGAGTGGAAGCCGAAGAATCTTTGGAAAATGCACTTAAAGCCAATACATAAAAGTTAATTTGATAGTCAGCTCAGCCATAAAGTGGAAATGTTTTCACAACCTTGGGCTTGTGATCAGTGAAAATGCTGTCTACAGTGCTGAGTAGTGAGGCTGGAGCTCTTGTTTTCTTTGCATGTGAACTCTAATGAGCAGGTACTCGTCTAGTAATGAAGCACATATGCGCTTACTTCAGCTTTTGGAGAAAGTTACCTGACAGGTGTTTTTattagttacattttttttttttttatcattgttTATTGTTTCAACCATGCTTGTTTTATGCTATAAGCCTTACCCTTGTAAGCAAGCATGATGTGTTTGTATTCCATACAGTACTTTGCCTTTTCTGCCCCTCAGTGGCAGTGTATGAGACTTACTTTAAGATAATTCTGCTGTGCTGTTGCTGGTCAATGTGTTGGATTTGTACAGTTAAGATTAACATTCTGTGGCGTTCACAATTTATGGTGGACGATAGACAGTCTTACCAGTTGGCATTAGCAACTGTTTTTATTTAGACAGACCACAGTATGAGTTGGAAATGGTTCTAAGTTTTttttcaccattcatttttccatcTGGGATTTTAGAACTACTTCCTAAGTTTTGATAACCACACATCTCTCTCATCAATAATTAGCATTGCGAAAGGGTAAATTGCAGCGACTATATTGATGACTACCCTCAGAGGATTACACAGCTATCAAAACGTCTCGCCAATGTAAGCCTATATCTAACACACAATTGAATTAGAATTGTCAttcaagtggcgcagtggtctaaagcactgcatctcagtgctagagctgtcactacagaccctggtttgatttcaggctgtatcacaaccgtccgtgattgggagtcccatagggcggtgcataattggcaaggcatcatccgggttagggtttggccgtcaatggaaataagaatttgttcttaactgaccagCCTAGTTACATTTTAAACATTCacaatgtgaaaaatgaatggtggaaaaaccattggaagcatttgtgtttatggGTGTTTATGGTGATTCCACTGTGCCATACTATTGACAATAGTATAAGTCTGGCCATTTGTGGCTTCACTTATTTTAATGAATTAACATTTCTAGTCATTGAGTTATTCTTGGTGAGTTCAAGTGGAGGTGGGGACACTGTCACAAAATAATGCTATATGGGAACACTACTGTCAGTCAGGTTGGGTAGCATGCAAGCAAGTAGCCCATTCAAAGCCTTCATAGAAGGAAAGATTGACAAGACAAGGTCGTCTGTGTGATTTGTAAAGATTCACTTACCATATTAAATAAACCAAAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599822 lncRNA upstream 13339 60432829 ~ 60435307 (+) True G529528
TU599819 lncRNA upstream 22818 60425506 ~ 60425828 (+) True G529525
TU599817 lncRNA upstream 27580 60420802 ~ 60421066 (+) True G529523
TU599799 lncRNA upstream 40550 60407689 ~ 60408096 (+) True G529506
TU599797 lncRNA upstream 41611 60406722 ~ 60407035 (+) True G529504
TU599859 lncRNA downstream 26421 60478691 ~ 60479017 (+) True G529559
TU599861 lncRNA downstream 29706 60481976 ~ 60482185 (+) True G529561
TU599862 lncRNA downstream 31992 60484262 ~ 60484462 (+) True G529562
TU599870 lncRNA downstream 39987 60492257 ~ 60492474 (+) True G529570
TU599871 lncRNA downstream 40503 60492773 ~ 60492977 (+) True G529571
XM_021607074.2 mRNA upstream 16339 60430201 ~ 60432307 (+) True LOC100653452
XM_036980620.1 mRNA upstream 273097 60167505 ~ 60175549 (+) True LOC110526261
XM_021607061.2 mRNA upstream 587000 59851162 ~ 59861646 (+) True LOC110526256
LOC118965037 mRNA upstream 601060 59843628 ~ 59847586 (+) True LOC118965037
XM_036980612.1 mRNA upstream 1071965 59343119 ~ 59376681 (+) True tshz3b
XM_021607080.2 mRNA downstream 55689 60507959 ~ 60525243 (+) True LOC110526268
XM_036980624.1 mRNA downstream 219438 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA downstream 219443 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA downstream 219443 60671713 ~ 60752783 (+) True LOC110526270
XM_021607089.2 mRNA downstream 363313 60815583 ~ 60863460 (+) False LOC110526274
TU598912 other upstream 676562 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1669629 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2076678 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2175810 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2335827 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1519466 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1697503 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2368150 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2559988 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2580661 63032931 ~ 63198734 (+) False G532237

Expression Profile