RNA id: XM_021607080.2


Basic Information

Item Value
RNA id XM_021607080.2
length 4105
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110526268
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60507959 ~ 60525243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaacctaACAATTAAGAAACACATGTTCGATTAAATAAGCCTCGCGTCACAAACAAGCCATTCCATATTTTTGtagaccaaattcgacactcacTTTGATTTCCAAACTAACACTCCTCACTTGGTTATGGCGAAAAAAAACACAACTTCGCCACCTGCTGGAGAATACAGATTTCGCGCTCAGTTATCCCTCTAGCATCGCCTCTTCCTCATATACTATCGTTCTTCATTTTCAGCGGTCATTAATTTCTGTGCTTCTTCTAGCTAACCTTCTGAGATCATGCATCGACTTCAGCACTTGGCAAATAGATCATTGATTGCACGTGTTTTTAACCAGTCTCCAGCCCTTGTGCGGACAAAGGCTCGGGAAACCTCATGTTTAGTGCAGTCCATACGACTCAAAACACAAGGACCCGTTGAACAGTATGGACAGAAGAGATTCAGTACAGCGGAGGCAACCGTGGTTTTAAGAGAGAATGGCAAGATGCGAGAAAAGAGTCTGACCATGGACACCCTCAATCCGCAAGTGAAAGCGGTGGAGTACGCTGTGAGAGGACCCATTGTCACGAAGGCTGGTGACATCGAGAGAGGCTTGCAACAGgGTCAGAAACACCCCTTCACTGAGGTCATCAAAGCCAACATTGGAGATTCACATGCCATGGGGCAGAAGCCAATCACCTTTCTCCGTCAGGTGGTGGCTCTCTGCTCATTCCCAGAGCTGTTGGACAGCTCTATTTTCCCGGATGATGCCAAACAACGTGCCCGTCGCATTCTACAGGGCTGTGGGGGACAGAGCTTGGGGTCATACAGTGCCAGCCAGGGAGTGGACTGTATTCGGCAGGACATTGCTGTCTACATCGAGCAACGGGATAAGGGTGTGCCTGCCGACTGGGACAATATTTACCTCACCACCGGAGCTAGTGATGGCATCGTGAGCATCTTGAAGATGCTGGTGTCGGGCCAGGGCCGGTCCAGGAGTGGTGTGATGATCCCCATCCCTCAGTACCCCCTATACTCTGCAGCCATCTCTGAGATGGAGGCCGTTCAGATCAACTACTACCTGGACGAGGACAACTGCTGGGCCCTGGATATCAACGAGCTCCACAGAGCCTACCAGGCTGCCAAGGAGCACTGTCACCCCAGAGTCATCTGCATTATCAATCCAGGCAACCCTACCGGTCAAGTGCAGAGTAAGAAGTGCATCGAGGAAGTCCTCCACTTTGCCTACGAGGAGAATCTGTTTGTTATGTCCGATGAGgtgtATCAGGACAACGTGTACTCCCCAGACTGTCAGTTCCACTCCTTTAAGAAGGTGCTCTATGAGATGGGCCCTGAGTACTTCAACACTGTCGAGCTGGCCTCATTTCACTCCACCTCCAAAGGCTACTCAGGAGAGTGTGGGTTTAGAGGAGGCTATATGGAGGTTCTCAACCTCGACCTGGAGGTCAAGGCCCAGCTGGTGAAGCTGCTTTCTGTTCGACTGTGTCCCCCTGTCTCTGGACAGGCTGCCATGGATGTCATCGTCAACCCTCCTCTGCCACACGAACCCTCCTATCTCCAGTTCCACAAGGAGAAGAGTGCTGTGCTTGGAGCTCTGGCTGAGAAGGCCCAGATGACTGAGCAGATCCTCAACACGGTGCCTGGGATCAAATGTAACCCTGTGCAGGGAGCCATGTACGCCTTCCCACGCATCTTCATCCCCCCACGAGCTGTGGAGGAAGCCATGTCCCTGGGAATATCTCCTGACATGATGTACTGTCTGAGACTGCTTGAGGAGACTGGCATCTGCCTCGTTCCAGGCAGTGGCTTCGGCCAGAGGGAAGGGACGTATCACTTCAGAATGACCATTCTGCCCACGACAGAGAAGCTGAAGGTGCTCCTGGAGAAGCTCCGGGATTTCCACATCAAGTTTCTGAAGGAGTACGCGTCATTGGAGGAACCCAAGAGATGAGAGCACAGAGGATGACACACCGGACGCACTGAAACAGTTCAGATAGTCCCAGTTTGAGAATGTttaacacacaaacaaaaacagcaTTTACAGCGGTGTCGACTAACAATGTAAAGTAAAAAAGTAACCCCTTTTTACTCTACTAGTGTAACCTATGATTGCTTGAAGTTTTATCTGATTTTAGGAACAGTACTTGTTTGAGAGACATTTGTGCCTTTGTCAGACGAGGTAAAAGTGTGGGGAGAAACTATGCCGTCTGTACAGAgatgttaaaggggcaatctgcagttgctacatacattttagGACTTGTCAATTAAATTGCAGTTCAATGTAcaaattgattcttgaagaatacaacttataaatgcctcataagctgtcgtaccccatcagaacacaAATATAAgctttgtaaatgtaaacaacctATATAGCcttaacatggttaaaactgtaatattgatttcatggatgatcagtccttgcatccattgcTCTGGCTATGAATTTGGTTACaattctccagtcccatccctcagATTTTTATTGAAACTGGCAGTGAGGACGTTTTATTGTAactactgctgattgcccctttaacactAAAGCAATGTACATTGTGATGTACGCAAAGGTGCTCCATTATAGAGGATGCACTGGGGAATTATTTTCTAACACtccattttgttgtttttgtgccCGGGAAGTTATTTACACTGTTTTGTATTTTCTACCTGTCTTGAGGCTTTTCTGTCTCCTTAGAGGCATTTTGTGTTAGTGCTCTACACTGTGGGGCACCGTAAGTGCAAATATTATCTTAGAACCAGCTGTACATTTCCATGTGCCAAATGGAACTGGGGAACAGAGGTTGTTTCTGTAGGTCATGGACTCCGGACAATGAGTACTGCTACATCAGCTCTTTCTGGTCTGAAAAACAGCAGGGAGGGGATACTCCTCACCATTTATAACAACATCCTGTCTCTCCAAGTCATAAAGCTTTGAGCCTGCATAGCTCCCTGTTGGGCACATGTTTACCCATATAGTACCTGTCTAGCATGACACTGATCTGAGGTGTCAGATGCACTTGGAGAGTTTTTTTttcaaggggtgtgtgtgtgtgtgtgtcccgtaCTCTCTGCCTAGTTGCAGTATAATGTGCTTGTTATGGAAAGAAATGCAGTTGTTTGTGTGCTACTTTGAAATGAGCTTAAAGGTCAAACCAAGGGAAATGTAGGTTCTGATAATACTGTATATCGACATGTGCCCTTATTAGGCTATTTATTGCATAGATAGTTTACATTTTTACTGACAGTGGCTTTATGTCTTTCATTCACATTTATATCACACCCGAGAACGAGAAAGGGAGTACGGTGACATCTCAGACGATGGAGATGGTGGGTTGAATGCACTTCAGTGTTTTTGTTTGTAAAATGTTTTTGGGATCCTTCCGCCTGTGTCTCTTTCTGCACACTGCAAGCGGGAGGAAATGTCATTGTAAAGTGAAACACAGCATTTACACAGAAACACTTTACAATTTCCCTTTTTAGGTTGGAGATGAGCATAGTGACCCACACAAGGCAGTCTTAAAGCTTCAGTCCAGTGAATTCAGCCAGCCGATGAACTGTGGTTCTCTGATACCGTATCATCTCATCTCTATTTTTGTATGCAGTTTAATGCTGAATGAAGTGTTGAAGCATTAATGTAACCTCGGGAGCCATTCAATGTATGAAACTCTTGACTGACCTCAACATGAATTGTTTTTAACCATTTGACGGCAATGGGGTGCCTTCAATGGCAATGAGCTGTAATTTACATTGAGTGACTTTTGAGAATGTCAacaaatttaatatttttttattaatactatgacattttttaaaatgtgcaTTTTCTGCTAAATGTTTTCATTTGTGTGCCTGCTTTCTTTTCAACATTCTTTcttcatgagctgaaagtttactGGAAGAAGTTTTGGGTTCAACATCGATGTGCTTATAAATATCAAGTTTCTAACTGAAATAAGACTTAACCCTAGTTTTATCTTGTCATGTTTATGTTTTGgatattaataaataaataaaaaattcagATTTGGATTTCTTATTTTGTTATTTCTGTTGTGTTTTGTACAATAAATACTTTTGAGATCC

Function

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599877 lncRNA upstream 3139 60501889 ~ 60504820 (+) True G529576
TU599874 lncRNA upstream 8775 60498147 ~ 60499184 (+) True G529574
TU599876 lncRNA upstream 9966 60497604 ~ 60497993 (+) True G529575
TU599873 lncRNA upstream 13818 60493942 ~ 60494141 (+) True G529573
TU599871 lncRNA upstream 14982 60492773 ~ 60492977 (+) True G529571
TU599899 lncRNA downstream 9650 60534893 ~ 60535096 (+) True G529592
TU599832 lncRNA downstream 15496 60540739 ~ 60540954 (+) True G529537
TU599837 lncRNA downstream 18486 60543729 ~ 60560821 (+) False G529539
TU599836 lncRNA downstream 33908 60559151 ~ 60560821 (+) True G529539
TU599984 lncRNA downstream 191793 60717036 ~ 60718709 (+) True G529675
XR_005052179.1 mRNA upstream 55689 60448606 ~ 60452270 (+) False LOC110526265
XR_005052180.1 mRNA upstream 55689 60448606 ~ 60452270 (+) False LOC110526265
XR_005052181.1 mRNA upstream 55689 60448606 ~ 60452270 (+) False LOC110526265
XR_005052182.1 mRNA upstream 55689 60448606 ~ 60452270 (+) False LOC110526265
XR_005052178.1 mRNA upstream 55689 60448646 ~ 60452270 (+) True LOC110526265
XM_036980624.1 mRNA downstream 146465 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA downstream 146470 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA downstream 146470 60671713 ~ 60752783 (+) True LOC110526270
XM_021607089.2 mRNA downstream 290340 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA downstream 304332 60829575 ~ 60863460 (+) True LOC110526274
TU598912 other upstream 735875 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1728942 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2135991 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2235123 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2395140 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1446493 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1624530 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2295177 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2487015 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2507688 63032931 ~ 63198734 (+) False G532237

Expression Profile