RNA id: XM_036980624.1


Basic Information

Item Value
RNA id XM_036980624.1
length 3995
RNA type mRNA
GC content 0.50
exon number 32
gene id LOC110526270
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60671708 ~ 60752783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCATCAGCACTTCCTAGTTTGCAGCAGTGTCACAACGTGCTGTTACTTAGTAAACACAGAGAACCAACCAACATGTCAAGCTTGGCAGATGTCGGCAGGAAACTCCTGGAAATCAAAGCCAGACAAAAACGTTCAGATTTGTAATTTAGCTGAGAGACGATTGCCCTTTACCTCACCTTTTGAAAATGGCCAGCTCGGAATGTGAGATTTCCAAAGCTCCTCGGAAACTAAAAAGATATGGCTCCATCTATGAACCTCTCAAGCTCTCCATTCTCCACCGGGAGGATGAGCCACTATGGGAGAAACTTGACCGCTACTACAATGCGGtgaagaCCACCATTCTGAACTACCAGAGCCCGACCACTGGCCTCTTCCCTACCAAGACATGCTCCAGCTGCAAGGAAGCCAAGGTGCGGGACTCCTTGTATTGTGCAGCCAGTTCCTGGGCCCTGGGTCTAGCTTACagACGCATCGATGATGACATGGGACGCACCCATGAGCTGGAGCACTCAGCCATCAAGTGCATGAGGGGTATCCTCTACTGTTACATGCGCCAGTCTGACAAGGTGGAACAATTCAAACAGGACCCCAGCCCCTCCAAGTGCCTGCACTCAATATTCAATGTAGACACAGGAGATGAGATTCTGTCCTACAATGACTACCATCACCTACAGaTTGATGCCTTGTCCCTGTTCCTGCTCTATTTGGTGGAGATGATCTGCTCCGGCCTCCAGATCATCTACAACACGGATGAGGTATCGTTCATCCAGAATCTGGTATTCTGTGTAGAGAGGGCATACAGAGTGCCTGACTTTGgcatgtgggagagagggagcaagtaCAACAATGGAAGCACTGAATTGCACTCCAGTTCTGTGGGGCTGGCCAAAGCTGCTCTCGAGGCTATCAATGGATTCAACCTGTTTGGGAATCAGGGTTGCTCTTGGTCTGTCATCTTCGTGGACCTGGATGCCCACAACAGGAACAGACAGACACTGTCCTCCCTCCTACCCAGAGAATCCAGGTCCCACAATACGGACGCTGCCCTCCTGCCCTGCATCAGCTACCCTGCATTCGCTGTGGATGACGACGCCCTCTACAGTCAGACCCTGGACAAGGTGGTGCGCAAGCTAAAGGGGAAGTATGGCTTCAAGCGCTTCCTGCGTGACGGCTACAGGACCGCCAATGAGGACAAGAACAGGAGACACTACAAACCGGCTGAGATGAAGCTTTTTGATGGCATTGAATGCGAGTTTCCCATATTTTTCATCTTCATGATGATTGATGGAGTCTTCAGGGGGAACAACGCCCAAGTCAAAGAATACCAAGACCTGTTAACACCTATCATCTTTCAATCTTTTGATGGCCATGCTGTCATCCCGAAGTACTACCGCGTACCTGCCGACTTTGTGGAGGCGGAGCAGAAGAAGCACGGGAGCCAGAAGCGTTTCCCTGCCAACACGGGCCAGGATGGCATGCTGTTCCTGTGGGGCCAGGCCCTCTTCAACATCGCCAGGCTGCTggTGGATGAGCTGATCAGCCCCCAAGACATCGACCCCATCAAACGCTACGTACCCCGACAGGATCAGAGGAACGTCAGCATGAGATACTCCAATCAGggtCCCATTGATAATGACACGGTGGTCCATGTGGCCCTGATTGCTGAGAGCCAGAGacTGCAGGTGTTTCTGAACACCTATGGCATCCAGACTCAGACACCCCAGCAGGTGGAGCCCATTCAGATCTGGGCCCAGAAGGAACTGGTCAATGCGTACCGCTTCCTGGCCATCAATAAGAAGCTGGGGCTGAGTGGGCGTCCAGAAAGGCCAGTGGGCTGCATGGGGACTTGCAAGATTTATCGGATCCTGGGGAAGACTGTGGTGTGCTACCCTATCGTCTTTGATCTCAGTGACTTCTACTTATCCCAGGACGTCATGCTGCTGATTGATGACATCAAGAATGCACTGCAGTTCATCAAGCATAGCTGGAAAATGAAAGGTCGCCCACTCTTCCTGGTCCTCATCAGAGAGGACAACATCAAGGGGAGCCGTTTCAACCCAGTCCTGGACATGTTGGCATCGTTCAAGAAGGGGAGCGTCGGTGGGGTCAAAGTACACGTGGACAGACTTCAGACCCTGATATCAGGAGCTATTGTGGAGCAGTTGGACTTCCTTCGTGTCAATGAAGAAGAAATCCCAGAGTTCAAGAACTTTCAGGAGCTGGAGATGCCCAAGCACTCCAAGGTAAAGAGGCAGACGAGCACGCCCAATGCCTCAAACCTGGAGCAGCAGCCTGAGATCGACATTGAGGAGTGGAAACACAAATCCACCAACGAGATCATGCAGAAATTCTATGACTGTGACTGCCTGGCCAGTCAAGCACAGCTTGCCAGTATTCTCATGAAGAAAGAGGGTCCTGACTTCTTTGCCAATGATGAGACCCTCATGGAAGACATGGAGAGACTCTACAGAATAGCTGGGACCAGAAAACTTTGGGGGGTTGTACGAATCGCAGCCAGTGTGATAACTAAGCTAGTGGACAGCATTGCCCCAAGTATTACTAGTGTTTTAGTGCATGGCAAGCAGGTAACACTGGGACTGTTTGGGCATGAGGAGGAGGTAATCTCCAACCCCCTCTCACCTGGGGTCATCAAGGGCATCCTCTACAGCAAGTGCTACGGGGAGAGGGAGGCCGTGCTGCAGCAGGAGCTGGTCATCCACATCGGCTGGATCATCTCCAACACCCCCGAGCTGTTCAGCGGCATGCTCAAGATCCGCGTCGGGTGGATCATCCAGGCCATGAAGCATGAGTTGGAGATCCGAGCAGGTGACATGTCACCCCAGGACATTTACCAGATGTCCCCCAGCGATGTTAAACAGCTGCTGTTGGATGTCCTTCAGCCACAACAGCACGGCAGGTCCTGGATCAACATGCGTCAAATCGATGGTTCCCTCAACAGGACTCCCCATGGCTTCTATGACCGAGTGTGGCAGATTTTGGAGAGAACTTGTAACGGCATCGTAGTGGCAGGGATCCATCTCCCACAGCAACCTACACTATCTGACATGACCATGTATGAGATGAACTTTTCTCTGCTGGTGGAAGACACCCTGAAGGACATTGTGCTGCCTGAGTACAGGCAGATAGTAGTAGAGCTGCTGATGGTGGTGTCCATAGTGTTGGAGAGAAACCCGGAGCTGGAGTTTTCAGAGAAGGTTGACCTGGACGTTCTGGTGAAGGAGGCCTTCCATGACTTCCAGAAGGACAGGAGTCGGGAGGGGATGAATAAACCGGATGACATGGAGGAGTTCTATAAGACACCTCCGATGGGCAGGAGAGGCACCTCCAGTTACCTGACCAAGGCTGTGATGATTCAGCTGCTTCAGGGAGACGTGAAGCCCTCCAAGGATGACCCCTGCTCGGTCAGCTAAACGAAACCCGTTCAGCGGAGTAGAGGAGTCCACCTCTACTGTACTTCGTTGAACTACTAACAACATGCTAAATTAGTCAGCAGCACTGACTGTTGTTCCACCAGCAATACCCTTGTTCTGTTAGCTTCAAGCTATTAGGACAGAATGTATCAGATCTTATCAACACCGTTACTACTGATAACAACATTGAACTCTTACCCCCTGAAATCCTTGCATGTAGACTTGTTTGTATAGCATTAGCATTGTAGGGCAGCCCAGTGCACACTTTTTTTTGTTCTCTAAGTCTTAGGAAGTCCAGGTCTTTTTGAAAGCCTGGTCGCTGTATTTTTCTGAATGTGGTTAATACACAGTCATTTGAGTTCCTTCACTCTTAATAACATGATATATTAATTAAGTTGTTTATGTGTTTGCACGTGGTTTGAGTGTGCCGACCCAGTGTAGTGAATCTGAATTAGAACTTTTTCAATGTGTGTGACGATTGCCATTGTGTTCCGCCACTCGATCAAGGGGATTTTGGAAGCTCAACACTAGTTTCAAAAAAATAAACTTGTGGAACCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599837 lncRNA upstream 110887 60543729 ~ 60560821 (+) False G529539
TU599836 lncRNA upstream 110887 60559151 ~ 60560821 (+) True G529539
TU599832 lncRNA upstream 130754 60540739 ~ 60540954 (+) True G529537
TU599899 lncRNA upstream 136612 60534893 ~ 60535096 (+) True G529592
TU599877 lncRNA upstream 166888 60501889 ~ 60504820 (+) True G529576
TU599840 lncRNA downstream 489 60753272 ~ 60753484 (+) True G529542
TU600193 lncRNA downstream 8295 60761078 ~ 60761319 (+) True G529875
TU600208 lncRNA downstream 20934 60773717 ~ 60773958 (+) True G529890
TU600216 lncRNA downstream 24597 60777380 ~ 60777622 (+) True G529898
TU600258 lncRNA downstream 100997 60853780 ~ 60854103 (+) True G529940
XM_021607080.2 mRNA upstream 146465 60507959 ~ 60525243 (+) True LOC110526268
XR_005052179.1 mRNA upstream 219438 60448606 ~ 60452270 (+) False LOC110526265
XM_021607089.2 mRNA downstream 62800 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA downstream 76792 60829575 ~ 60863460 (+) True LOC110526274
XM_036980630.1 mRNA downstream 1133050 61885833 ~ 61902001 (+) True LOC110526277
XM_021607098.2 mRNA downstream 1162936 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA downstream 1188732 61941515 ~ 61958209 (+) False LOC110526278
TU598912 other upstream 899624 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1892691 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2299740 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2398872 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2558889 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1218953 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1396990 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2067637 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2259475 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2280148 63032931 ~ 63198734 (+) False G532237

Expression Profile