RNA id: XM_021607089.2


Basic Information

Item Value
RNA id XM_021607089.2
length 6622
RNA type mRNA
GC content 0.51
exon number 23
gene id LOC110526274
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60815583 ~ 60863460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCACAGTCAGCACTCCGGCGATTTGCTACCTGTTTCAGAAAGACGCACGAGTGCGCTTTACCTCTCCAGGCACAGCCAAATGGACCCGGCGGACTAGACGTGATTACAtgtaaaaggcacctaaagaaatCAGCAATGTCTTACAGTTGCATTATCCGCTGCCACAGGTTATTACTTCTGTGTTTTTTGAGGAGGTAACAGAGGAGGATATTGCATGCCAACATGGATTGCCTTTTTCTTTTGATATGGACTTTGCCTATCCCACTTGTCAGCTGCACATCAGTGAAGATTTTATCCACTCTGTGGTTCTGGAACACATTGAAGACGCTGCATATCTACTGCTCACATTCCATTCATTCTGTTTCGTCCACTTTTGCCAGTGACACCAGTGGACTGAATCATGATTACATGTTTGTGACCCCAATTGAGGTGGATGCTCGGGGTGGGTATGTGTCCCACGATATGCTGCGGCGAGGCCGGAATAAGAGGTCCCTGTCGTCCATTGGGGGCCCTGTACACTACAGGCTCTCTGCCTTCGGGAGGGACATGCACCTGGACTTACAGCCTGCCATGGTAGTGGCAGAGGGCTTCACAGTACAGGTACTGGGGACAGAGGGCATCACCACATTGGCACAGGAGCCAGCCCATCAGGACTGCTTGTATCAGGGATTTATACGCAACCTCACAGCTTCCTCTGCAGCCATATCTACATGTTCTGGCTTGTCAGGTCTGATCCGGATGTCTGATGATGAGTACTTCATCGCCCCCTTGCCCCAGCACCTAGCTGCAGAGCACAACTACACCTCCCCGAGTGGACACCACCCACACGTGGTCTACAAACGCTCGGCTGAACACAAAGTCCATGGTGGCCAGAGGTCTGTCCACAGCTCCCAACCTGACAACCCAAATCTACAGCACCATCACCAGCATCACCACGACTACCAGCACGGGAAACTGCAGAGACAACACTTCTGTGGACGCCGCAagcaatACACTCCCAAGCCCCCTGCTGAGGATCGTCTCGTCATGCCTGATGAGTTTGAGCTCCCAGGCAGGGGGAAGCGATCACCCGTCACGTCTAACAAGGTGGGGACCCTGAATGTGGAAACGCTGGTGGTGGCAGACAGGAAGATGCTGGAGAAACACGGCAGAGAGAACGTCACCACCTACGTCCTCACTGTTATGAACATGGTTTCCAGCCTTTTCAAAGACGGGACCATCGGAACTGATATCAACATTGTGGTGGTCAGCCTGCTTCTTCTAGAGCAAGATCCAcTCGGCCTGTCCATCAACCACCACGCTGACCAGTCTCTCAACAGTTTCTGCCAGTGGCAGTCGGGCCTGATCGGTAAGCGCCACGACCATGCCGTGCTCCTCACCGGCCTGGACATCTGCTCTTGGAAGAACGAGCCCTGTGACACCCTGGGTTTTGCTCCTATAAGTGGAATGTGTAGTAAATACCGGAGCTGTACGATTAATGAAGACACAGGACTGGGCTTAGCTTTCACCATCGCTCATGAATCAGGCCACAATTTTGGGATGATCCATGATGGAGAGGGGAATCCTTGTCGGAAAGCTGAAGGAAACATCATGTCTCCAACCCTGGCAGGAAATAACGGGGTCTTCTCCTGGTCTGCCTGCAGTCGCCAATACCTCAGCCGCTTCCTTGGAACAGCTCAAGCATCATGTCTGGTGGATGAGCCCAGGCAGATTGGGCAGTATAAATACCCAGAGCAGCTCCCAGGTCAGCTCTATGATGCTGACACACAGTGCAAGTGGCAGTTTGGCTCCAAGGCTAAACTGTGCAACCTGGACTTTGTCAAGGACATCTGTAAGTCACTGTGGTGCCACAGGACAGGTCACCGGTGTGAGACCAAGTTCATGCCCGCTGCCGAGGGCACCAGCTGTGGGACTGACATGtgGTGTCGGCGAGGCCAGTGTGTGAAGTATGGTGACCACGGTCCGAGAGCTGTTAACGGTCAGTGGTCAGGATGGTTGGAGTGGTCGGACTGTTCCAGGACATGTGGGGGAGGGGTGATGTACAGGGAGCGATCCTGCACCAGCCCCAGGCCACAACACAACGGGAAGTTTTGCCAGGGCTCCAGTCGTCTCAACCAGCTGTGTAACACAAAGCCGTGCCAGCCCAGCGGAGTGGACTTCCGTGCTCAGCAGTGTGCTGAGTACAACAGCAAACCCTTCAGGGGATGGTACTACAAATGGAAGCCCTACACCAAGGTGGAAGCTGAGGATATCTGCAAGCTGTACTGCATCGCCGAGGACTTTGACTTCTTctttgccatggccagcaaagtcAAGGACGGGACATCCTGCTCAGACCACAGAGGGGACTTGTGCATCGAAGGAGTCTGTGAGCCGGTAGGTTGTGACCAGGTGCTGGGCTCTAAGGCAACTCTGGATGCCTGTGGAGTTTGTAGAGGGGACAACTCCACCTGCAAGTTCTTCAAAGGCCAGTACGTCCTCCAGCACAGAGCTAATGAATACTACGCCATGGTGACCATCCCACCTGGAGCGCGGAGCATCCATGTTCAGGAGATGGAGATCTCCACCAGCTACCTGGCTGTGCGCACCCTGAAGAGGAAGTACTATCTGACAGGGGACTGGACAGTGGACTGGCCTGGAAAGTTCCAGTTCGGTGGGACGGTGTTTGACTATCAGCGCTCTTTCAACCACCCAGAGAGCCTGTACACGGCTGGACCCACTAATGAGACCCTGGTCTTTGAAatcCTGCTGCAGGGTAAGAACTCGGGTGTGGTGTGGGAGTACACCTTGCCCCGCAGTGAGAGGAAACCCAACTACACATGGGGAGTGGTTCGCTCTGACTGCTCGGCCCCGTGTGCTGGAGgTCGGATCTCGACAAAAGCCATCTGTTTGCAAGATCAGCGGACCCAAGTCAACTCGACACAGTGCAACCCTCAGACCCGACCAGTGCTCAGCTCTCACCTGTGCAACACGCAGCCCTGCCCAGCCTACTGGACGACAGGGGACTGGGGGCCCTGCAGTCGGTCCTGTGGTGGCGGGCAACAGACACGTCACATCCAGTGCTTGCGTAAGGTGACGTACCAGCGGGAGGAGGTGGTGGCTCACTCCCTGTGCCCGGTCATCGCCCCGGCCCAGGTGCAGCCCTGCCACACCCAGGCTTGCCCATCTGAGTGGAGCTCTGGAGCCTGGTCACAGTGTTCCAAGTCGTGTGGGCGTGGGATGAGGAAGCGTGGCGTGTTCTGCAGGAGCACTGACCCCGGAGCAAAGGCTGTGGTGGTGCCGGACAGTATGTGTAAGCCACACCACAAACCCAAGGCCCAGGAGACATGCGTCGTGCGCCGCTGCCCCAAGAATGACCGGCTGCAGTGGTTCACAACACCCTGGGGCGAGTGCTCCACATCCTGTGGCCCAGGTGTCAGAAGCAGAGAGCTGCGTTGTAGGGAGAGGGATTCACAGGGGGGCTACACAGAGTTCCCTATGAGAAGGTGCAGGAACCTTCCCAAACCCTCTGGGGAGCTCCAGCAGACCTGCAGCATGGGGCCGTGCCCAGAGCCTCGACTTGTCGTCCCAGGAAGAACAACCAGTGCAGTGGTCCTGGGCTGGTACTCTTCTCCTTGGCAGCAGtgttctGTATCCTGTGGGGGAGGGGTACAGTCCCGTTCTATCCAGTGTCTGAGACAGGGACGTCCTGCAGCTGGATGCCTGAACCCCCAGAGACCCATAACTTCCCGGGCCTGCAACACACACTTCTGTCCTGCTCCTCGTCCtgctccccctgctcctcctgttCCTGGGCCAGCCCTCAAAGACGAACAGTCTTGTGTCGACTTCTTCAGCTGGTGTCACCTGGTTCCTCAGCACAGTGTGTGCAATCACAAGTTCTACGGACATCAGTGCTGCAAGTCCTGCAATGGCAAAAAGCTATAAGTTCGGAGGACTCCTTTTCCCATGAGCCTCTAGCTGCGAATTGCTTAATATGCGCTACAACTCTAAAGGGTGCTGTGGTTGAAAATACACTTTGGGCCATAATGTACAAGAGAACTGAGGTGCAGTCTCTGTTCCTGGAGTACTTGACTAACAGTGATTAGCAAAATAAAAGAGAATAATCTCCATCTTTCTGGATACGTTGTGCTAAAGATGGCAATGTGGGCAAAGACATTCATGCGAATGCAGCATCTCATACTGTAACTGCAAATGCAGTGCAACAAATCATTGCAGGACATTCTCTGTGTAAACATATGTGTTGTATGTCCTGATACTGTCAACATCTCACTCAAAGCCATCAAGAGAGCTCTGAGAATATCTGCATTTTAGCTCGCTCATGTTTTGGATATGTAAAGGCATCTGGTTTCAGACGACATTTTAAGTTATTATGGCACACATGTCATTTTAGCATTTGTCAGGTGTACAATGTGCTCTGTGTGCTGCATGTGCTCCGTGTGCTGCATGTGCTCCATGTTTCAAGCTCTTTACATGTAGCAGGCTACCTAATCACAGAAATGATACATGTAAAACTTTAAAAATACCTTTTGAAGTTGATCACAACTCCCAAATGCACTTATCAGGCCTGGTCCCTCTATCTTTCATGGTTCATGATTGGTGCTTCATTGTGTAACAAGATACAGTACTTACAATACATGTGTACATTCCATACATCTTCATGTTGTGAATACATGCATATTTGTGTATGAGAAAATAACGTTTGTTTACCCATATTTTAATGTATGCTCCAAGtgtcctgagcaaggcagttaacccactgttccatcGGGCGCCGATGACTTGgacgttgattaaggcagcctcaTACAccactctgattcagaggggttgggttaaatgcggaagacacatttcagttgcaTGCATTCAGTTGCACAAACtgtctaggtatcccccttccttTTCTTGTGAAAATATTGGTGCTGACAGCCGCCGGGATACCCTATGTTCTTTCCCATCATTCCCATCATCATGATAAGGAAACATCCTCTGTCTATTGGGCCAGCAGCACTGAACCTAGGTCCTCTCACACCGGATAGATATGATGCCAAATCATTAACTAGCGCTGGGTATAGCCACAGAGGATCCCCCAGACTTCCACCACTCATTCATGAAAATCAATGTCTGCAGGCTAGTAAAGGGAGCTGTGGATGGGGCCGGGTCAGAGAAGATGCTTTATTTCCTCTGCCTGGCCTGGTGGGAGATGTGGAGAGAAGTGGTAGGCGAGAGTTGGCGGCATAgttgagagggaggaaggggtagCCAGGGTTGAGGTTGTCACGTGCTCTCGACATACTTTTTCAGAATGCTAATTAGTCACAGAGCCTGGCGTGGTGGGAGCAGACAGACTTTAGGGGGGGGCAGAGCAGACCAACAAAGGCCTCTAAAGAGGGCTGCTGCATACTTCCCTCTGTTTACTCTGCCCCTGCTCTCACCATCCAGACCAGCTCTGTTTGGTTTGTTTGAGAAAATGTCAGCATCCCTCCACTCCCCCGCTCCCTCTctcgtgaccccccccccccccccccccaccttcatTTTTAGCATCAGTCAGTGCTACAAAGTACTGTAGATCGCAGCTACACGATGGTAAATCCCATTTTTGCACTATTGGCCATGTAGAAGGCAATGGGATAGCCAATCATACAGACAGCAAAGGCAACCTACTTCCAGCCAgcagggagagaaacaggaagagcaTGGCCAGAGTATAGGATGTTGTTTGCTGTAAATCATAAAGATCCTACGTCTCCCCCTGCTCCCCAGAGAGGGATGGTCccatacagagagagatgtcTGGTCTGGTCAGAGGCTCTGTGACCATGGAGTTGTTTTTCCTCCTCCTCAGCCTGCTCTCCATCAGTGGCTTTGAATGGAGAgtgtagagggacagagagagaaagactgatatGATTGTGAAGGACATCCCTGAGCGGTGGCTCTCTCTGCCTCTGGTCTGGCCTGCTCACGGCTAACACGGTCATTCTCATGGGAGGCTACCATTCCTTCCAATACCACAGCTTCCTCCCCTGCCTTCACCAGGCCTGTACAGCATCCCTGCAACCTACGCTCACAAAGGGTCAAGATGGACTGTTGactgttccttctccctttctTGCTATACTCGTATGGtcattttatgtttttgtttgttatatTGGTTAATGAACTAGTTTCCACCAGGGATGGTACTCTCTCTGTATTATAAAACCACTCAAATAGTTTCCGGTCCCTGGGAATTGTCTGTGTGAATTATCTCTAGTTTATTGTGCTGAACTAATGCTCTCAAATAGACTTTCAAATGTCACATTGGCCTGTAGGAGGACATGGGAGCGGGGAATGTTTGATTTTATGTGTGTTTTTTCATCAGCCTTTCATCGTTCGTATTTCCACATGTGTTGTTCGTGTTATTTTCTATGTCCTGTACAGTTGTTGTATACTCTATTGTCTTTTCACCTGTAAAGACAGGAAACGTGTGTAATTTATTACTGTTTCATTGGATCTGAGATACTGAACACTATTCGTTGAGAGGGGAGCTGCTTGTACTATAGAGCATGATCCGTGTAATATTTAATACTTTTTCTCAAAGTTTTATAATAAAACTATGACAAAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU600216 lncRNA upstream 37961 60777380 ~ 60777622 (+) True G529898
TU600208 lncRNA upstream 41625 60773717 ~ 60773958 (+) True G529890
TU600193 lncRNA upstream 54264 60761078 ~ 60761319 (+) True G529875
TU599840 lncRNA upstream 62099 60753272 ~ 60753484 (+) True G529542
TU599984 lncRNA upstream 96874 60717036 ~ 60718709 (+) True G529675
TU600499 lncRNA downstream 101275 60964735 ~ 60965227 (+) True G530174
TU600506 lncRNA downstream 105715 60969175 ~ 60969376 (+) True G530181
TU600513 lncRNA downstream 109021 60972481 ~ 60977654 (+) True G530188
TU600521 lncRNA downstream 116397 60979857 ~ 60980105 (+) True G530194
TU600803 lncRNA downstream 448689 61312149 ~ 61312435 (+) True G530463
XM_036980624.1 mRNA upstream 62800 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA upstream 62800 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA upstream 62800 60671713 ~ 60752783 (+) True LOC110526270
XM_021607080.2 mRNA upstream 290340 60507959 ~ 60525243 (+) True LOC110526268
XR_005052180.1 mRNA upstream 363313 60448606 ~ 60452270 (+) False LOC110526265
XM_036980630.1 mRNA downstream 1022373 61885833 ~ 61902001 (+) True LOC110526277
XM_021607098.2 mRNA downstream 1052259 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA downstream 1078055 61941515 ~ 61958209 (+) False LOC110526278
XM_021607100.2 mRNA downstream 1097926 61961386 ~ 61964415 (+) True LOC110526279
XM_021607105.2 mRNA downstream 1108027 61971487 ~ 61979525 (+) False LOC110526282
TU598912 other upstream 1043499 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 2036566 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2443615 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2542747 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2702764 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1108276 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1286313 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 1956960 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2148798 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2169471 63032931 ~ 63198734 (+) False G532237

Expression Profile