RNA id: XM_036980630.1


Basic Information

Item Value
RNA id XM_036980630.1
length 5151
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110526277
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61885833 ~ 61902001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTGTGATACACGCATCGcatgcctccctctcccccctcagcccaGGCTCTGCTCTTCAGGCTGcaattaggagaggagagggactataACAGGAAACGTGACCAGGGGAACTGGGCTGATCTCTGTGGCCACTGTGCTGGCCTGGAAGTTCTTAGTGCTCCCCTCTGAGAAGAGAATCTGACAGGTCCACAGCCAACAGCTAACATTACTAATGCTCTTTCACCCAGGATCTACCTGTGACTTATACCTGCCTCATACGCATTGGACGAGCTAAAAAGCAGGAGTTCAGAAAATTTTTAATCTTTGATGATGAGACAGTCTGCATGGAGGCAGATGACGGCACCAGAGCTGTGGATGGGTCTCTTTGCCTTGGCCCTGACCCTCAGTCTAACCATGGCTGAACATATGGATCAGAGGCCAGCACTCCAAACCAGCCCAGTTCTCCACAGGCACAAGAGAGAGTGGTTGTGGAACAACCTTTACGTGGAGGAGGAAAGGCCAACCTACTTCCAATACTATCTTGGAAAGTTAAAGTCAACAAAGTCTGGTGACAGGACACACTATGTCATTGAGGGAGAAGGTGCCAACACAATCTTCAAAGTGGATGAAAAAGGAGACATCTTTGTCACTGAACGATTGGATCGAGAGGTGAAAAGCAAATACCATCTAAGTGCAAAGCTGGTTGATACCAGCAACAAATTGGTGGAGAAAGTGGAAGACTTTGTGATCCTGGTTACTGACATCAATGACAATGATCCAGTGTTTACTAAATCGTTCAACGCTTCTATCAAAGAGAGATCCAAAAGAGGAACTAAAGTGATAGAAGTCACAGCCACTGATGCAGATGATCCAACGACTGCAAATGGagaacttgattacaaattattaGAGGGGGGAGATTTCTTCAATATAGACAGCACAACAGGGATTATCACCACCAAATATGAGAACCTGGACCGTGAGACCCAGAGTAGCTATGTGGTTGTGGTTCAAGCCCAGGATCTGAGAGGACTTAAACAAGGGGGCACCGCCACCACCTCTGTCAGCATCGCAGTCAGCGACATCAATGATAACATAGCCACATTTACCAAAAGTTCCTATGTATTTAGAGTGAAAGAGGACATGAAGCGGGGACAGAGAATAGACACCATGGTCCTGGAGGACAGAGATGAGATCCAGAATAAAGACCCCATCTTCACCATAGCACCTTCATCTGACATTTTTGAAATGGAGCGCAGTCAGATCAAAGACGGCAACCTCATGCTGAAAAAGGGACTGGATTATGAAACCAAGAGCAGCTACACATTCTTTGTGCATGTGAGGGAGAACCACTTGCAGTCCCCTGCGGATAATAAGGACAATCCTTTGATCAAGgcccaggtgaccatccaggtgCTAGATGTTGATGAGCAGCCAGAATTCAGCAAGAGCATCTACAACTTTAATGTCATTGAGGAAATGATGGTCAATAATATTGGAGTCATTTCAGCCAGAGATCCTGATCAAGCCAAAAAGGCCATACGGTATTCCATTGAGGACAAGGACAGTCCCATTGGTATCAACCCCATAACTGGACAACTTTTCACAGTGAGGAAGCTGGATCGGGAGTTAGTAGCCAATCACATGTTCCAGGTTAAAGCTAAGGAGGAACCAAATGGACTGGAATCTTTTGTGAACGTCAACATACTGGTCATTGATATCAATGACAACAAACCAGAGCTGTCCATTGAGGAGATATTCGTTTGTGAAAATGATATGGCTGGAACGGTGATTGGGACCATAAGTGCCACAGACAAAGATGATCATTTGCCCGCATTCAGCTTCACGTTGGTGAAGCCGAACGGCAACTTTTCAGTCATCGATAACAACGACAACACATCTAACATAGTGCTGAAACATGGAGGCTTCAGCCTGGAGGACTCCAGGGATTATGTAATAGAAATTGGGATCAGCGATGGAGGCAGGCCTCCCATGAACAGCATCACCTCTCTGCCTATCAAAGTGTGCAGGTGTGACAACAAGAGGATCCACACCCAGTGCAAAGCAGCCCAACTCAAAATGGGTGTCAGTGTCCACGCCCTTATTGTTATACTGGTGTGCATCCTGACTATTCTGGTCGTAGTGATCCTGATCGCTATGAGAAAACGTCACCAGAAGGATGCCCTGGTCACTCTGGGTAAGAGTGAGATCCACGAGCAGCTAGTGACGTACGACGAGGAGGGCGGTGGGGAGATGGACACCAATGGCTATGACGTGTCCATCCTGACCTCAGCTCGGAATGACGGCAGCATGAGCATGAGGCAGGGCCCCAGCCTTTACGCCATGGTGAAGAAACCGCCAACCGCGTGCAAGGGAGACATGGCCGTGATGATCGAGGTGAAGAAAGACGAGGCTGACCATGACAGGGATGAGATCCCCTACGATACCCTGCACATCTATGGCTACGAGGGGCCAGAGTCCCTGGCTGGTAGCCTCAGTTCCCTGGATAGTTCCTCTACTGGCTCTAACCTTGACTATGACTTCTTAAACGACTGGGGCCCTCGCTTCAGAACCCTGGCTGAGCTCTACGGGGTGGATGGGTCTGAGGGAAGTGGCTCACCATATTGAGCACACTGAGCCTAAAGACCAGCAGGCAGGAtgtctctcagctctctcagctCTTCCTTTGACTAAAAGCACATCGGGATTAACTTCTTCCACTAATCCGTCCAATCATAGCACACTATGATAGGGTCCACTCAAGCGTGTGCCAATTTTAAGTAATTCTCTCTTCTTCTCGTTCTTTTTCCTCTTCTTCTACCTCTTGTTCCTCCTACTCTTACTTCTCCTTTTTCCACTcccttgttattattattattctattattatttTAAAGAAATAGTGCTTTTATTTCCTTTTCTTTCATTTTATTTGTTTCTGTCACGTGAATATGACGACAAAGGGAAATAGATTTGGTGTAAAGAAAACCGTTAACATTCCACAACTGtgcttcatttatttattttacatttatttgagGTTTCAGAGGAGATAAAGAAAATGTGTTTGATTTTTTGTCCGATTACTCTCACAGAAATCTGTATTCCTTCATTTTGATTGATTGTGGTTTTTTTTATGGTTGACTAAACCAACTGTAGCTATGTAGAGAGGGTGGGTCATTCAGTGAGTCACAGTGGCAGTTGTCTTTCAGACAGAATTACCCTTCTCACCAAGAGCTACTATTGTCCAGGGAGCCCGGCAGGAAACAATGATAACAGAAGCTCTGAAATAATTAAAGTCTTTCCCCGTGTATTTGACAGGACTCATCAACACATCAATTGTTGTGGATAAAGCCCAAGTCTCTGAGGTCCACTGTAACAAAAGTATTACAACCAACTCAGGAAATGTGAAGTAGCTCAATAGTCCTTTGGATGACCACAAAGTTATCTGAATAACTTTAACCTTTCATCCTAGAGCTACTGCTTCAACATCCCGCTTCAACATACTGCTTCAACATACTGCTTCAATATTCTTCTTCAACAACTGCTTCAACATATTGCTTCAACATACTGCTTCAACATATTGCTTCAACATACTGCTTCAACATATTGCTTCAACAAACTGCTTCACTATTCTTCTTCAACATATTGCTTCAACATACTGCTTCACTATTCTTCTTCAACATATTGCTTCAACATACTGCTTCAACATCCTACTTCAACATACTGCTTCAACATCCTACTTCAACATACTGTTTCAACATACTGCTTCAACATACTGCTTCAACATCCTACTTCAACATACCGTTTCAACATACTGCTTCAACATACTGCTTCAACATCCTACTTCAACATACTGTTTCAACATACTGCTTCAACATACTGCTTTAACATACTGCTTCAATATTCTACTTCAACATAGTGCTTCTGCTCCATTTGCTGAAACAGCTTAAAATAATGAGGGCAATCTACACAAGATCAAGTTTATCACTATCGCTATTGTCCTTCTTGACTGAAGACATAGCAAAAAGAGAGCAAAGGTTTACCCCTGTTTTCATTATATTCCATTTGATTTAGAATGTGGACTGTTTGTTGTATACTGAAGCTTTGCCTACATGGGACCACTTCTCATAAACCATGGATACAATATGTGGAAGCCATCTTACCACTTCCCTGTCTGGATCATATACATGGAGAGCTGGACCCCCATCCTTTTTAAACACCAGAGTCCGCCCCTACACATTACCCAAACAAAACACTGGAATCTGCTTCCTGCACATATGTGTGTGAGGAAGCCCTCTTCCTGTCCCGTTATCTTTTAAAGTAAAGCAACACATTGCATCCCGTTTTCCTGTTTTCCTGCCTGGGAAAAACCGCTGGAGAGGGCAAAATAGATATAGAACAATGTAAGAGCCATGATGGCTTTAACAACAAGCAACATTTAATTTCTGTGTTGACCATCTACCAAAGATCAGTATGATGAAACCTCGGCATACAATAGATGCCACTGGTAAACTGTGCTGTAATGTTATGTATCTAGTACTCCATTTCTATATAACATACCTGATCTACTTCGTTCCATGCTATTAATGATCATTGTCTGCGCACAACTCTATTCTATTTCACAAGCTCCTACTGTTAGTGGTGCTCTTCTGTAAACCTTACGGCAATAAGTAACTTGGCAATACGGGATCCATGTTATCGAGATTGTGAGTACTGAAAATATAGTTGTCTACGCTGTATATAGAAATGTGCCTGAATATTGATACTGGCCTCACTTCCTTTTGCGTTTTTTCAAAATTATTTTACTTGACACTGGTCTTTGTCTGCTGAGTGTAAgtgtaaaatatgtattttttttttacacttgtaGTTTAATTGATGTGTAATTGTGCATTGAATGATGCTATATGTGTGAGTCTACCTGTGTAAATACACTTCAGTGGGTGTCAGTATTGGGCACCAAAAGGAGAAGAGAAAACATTCAAATTCATTCCTTTTGTATGCAGCTAGGTCATTCTGTAGGAGAGCAATATGTGCCTTGGTTTATGATCATTCTCTCGATGGTGAACACAATCTTTTCTATGGTTTGTATTGTGTAAAACAACAACTTTTTATTTAGTACCAATTTTGTATGTGTAAAATAAACGTAGCACTCAAAAGTCCAAAAA

Function

GO: NA

KEGG:

id description
K06533 CDH5, CD144; cadherin 5, type 2, VE-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601545 lncRNA upstream 88298 61797329 ~ 61797535 (+) True G531184
TU601541 lncRNA upstream 92585 61792807 ~ 61793248 (+) True G531180
TU601517 lncRNA upstream 121500 61763969 ~ 61764333 (+) True G531156
TU601516 lncRNA upstream 121894 61763684 ~ 61763939 (+) True G531155
TU601374 lncRNA upstream 299105 61586228 ~ 61586728 (+) True G531018
TU601621 lncRNA downstream 1570 61903571 ~ 61960273 (+) True LOC110526278
TU601704 lncRNA downstream 140339 62042340 ~ 62042547 (+) True G531331
TU601705 lncRNA downstream 140717 62042718 ~ 62042987 (+) True G531332
TU601706 lncRNA downstream 141146 62043147 ~ 62043433 (+) True G531333
TU601707 lncRNA downstream 142284 62044285 ~ 62044504 (+) True G531334
XM_021607089.2 mRNA upstream 1022373 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA upstream 1022373 60829575 ~ 60863460 (+) True LOC110526274
XM_036980624.1 mRNA upstream 1133050 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA upstream 1133050 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA upstream 1133050 60671713 ~ 60752783 (+) True LOC110526270
XM_021607098.2 mRNA downstream 13718 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA downstream 39514 61941515 ~ 61958209 (+) False LOC110526278
XM_021607100.2 mRNA downstream 59385 61961386 ~ 61964415 (+) True LOC110526279
XM_021607105.2 mRNA downstream 69486 61971487 ~ 61979525 (+) False LOC110526282
XM_036980635.1 mRNA downstream 124087 62026088 ~ 62032556 (+) True LOC110526284
TU598912 other upstream 2113749 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3106816 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3513865 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 3612997 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 3773014 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 69735 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 247772 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 918419 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 1110257 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 1130930 63032931 ~ 63198734 (+) False G532237

Expression Profile