RNA id: XM_021607099.2


Basic Information

Item Value
RNA id XM_021607099.2
length 2311
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110526278
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61903571 ~ 61960273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaacctaacaaatgtggaaaaagtcaaggtatgtgaatactttccgaaggcactgtatgccaaCACATAAACAGCGTGTCGCAGTAGACTACTCTGCCAGATCTTCAAATCAACACACAATGCTCACTGTGGATTAAAAGATTAACATTGATTGTGATCAACACAAATATTTTATAACCTCAATTATGGCAGGAATTCCTCAGCAGggaagagatgaatagagactaATACGATTAGCATTTAGACAACGGCCTCCTCATAAATAAATTGATTAGATTTCTTGTCTCCTGTTGATGGCCCCCAAAAAGATTTTCAGATGCCAAATTTGGCAAAGATAACACGCAGCTTGTATTATCTCGGCCTGCACTTGGATATTGAATCTGTCTGTGTGACTATATGTGTGGTGTTATTTGAGTACATTTGATTTATGTTGTGTGCGCTTATTTTGGTTTCCCTCTAGTTCTGTTGAAAAGGGTGAAGGGGATTTGAGATGAGCCACTAATGGCTGAAGTTTCTGCCTCCTGAGCTGACATGAAAGAGTTCCACCCCGTGTATTTAAAAATTCTAACGGGTTGAGGATTAAATATTAAACACTGCAGACTTGAGAATCTATTCCTCCGCTGAGGAATGAAAATCTTGGGAGTGTTCCTGACCTGCGGTCCACAGAGAGTGAGCTCGAACCAGAGCAGTGCCCATGAGTACCCAGACTGCCGTGATGGGGGCAGCGAGGCCAGCCTGCTGGTGTCTCCGCTGGTGGTGGCTGGCATCGTCATCGGCCTGGTGCTCTTCCTGTCCTGCGTTACCATCATCGTGGGCAGCCTGCGCAAAGACAGCCGTCTGCGCAACCCCCACCTGCGGGCCAGCTATGCTCCGGATGGCTTTTCGTACGGCGGCTCCATCGGGGAGCTGAGGTCGACGTGTGTCGAGGAGTTCCCTCCAGCGTTTGACTTTGACTCCTACGTGGAGACTCTATCACAAGTCAATGTGATGTATCCAGACTCCCCGCCTCACTATGATGAATGTGTCGGACCAGGTGCGACACAGATATACGTCCCCACAGACGACCCCCCTCCGTATTCCCTCACGGACCCCTGTCAGCGGTGCCACCAGCAGGCCACCTACACCAGCCTGGAGATGGAGGAGCCGTCTGCTGGAGCTGGAGCCTCTTGGGTGTCCGCCAGCAGCGCCGCCACCTCCCACTACCCAATCGGACTGCACGAGCTCAGGCAGCAGCCAAtatcctccatctccctgtcagCGTTCCCCCTGGAGGAAGCGCCCCCGTATGAGGTGGTGGTGAGCAGGCAGAACCAGCCCATCCCTCTGATGCCCATGGACCTGCTCAAACACCCATCAGAAGACAGCCATAGTCCCCAGAGAGCCCGGGCTGTCGCACACAGGATCCTGTAGAGCTGACTGGGCTAGTCCTCTCCAATGCTCTTTGTGcagacagcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacctcccagccTAACTCTCTTCAGCTTCTTCCAGTGTCCCTTTGTGCATGACAGGCAGTATCAAAAGAGAATTACTTTCTGGACCGAAGCTGAAAGTTTGGGTTGAACCTAAACTCAGTCTGCgccttcctctccttcttcctcttggATAAGCTGTGTCCCCAAACTCTAAGATGTTACCCGCACCACTCCTCACTCTATCTCCCTTTACTACTGGGGCACTGCCATGAAATCACAGGGCTACTACTGGTAAACTGGGGCTGGGGGAGTAATTGTCTTTCTGTCCAGAGGGAATTCACTTCATACTGTAAATTGGTCTCAGGTTAGGAGGCATTCAAGCATTTAGGAAGCATTATCAAAGTCTGTTTTTAGCACAAAAAACACTAGAGGTAACCTGAAGTGGTTTCACATAGATATTCTGTATGTACTGTTGGATTTTGTTATGTTGTAATGGAATTGCTCTTGATAAAAAACACAATAGAAAGAATGACTAATTTCACATTCCATCACATATCCATATGGTTTTATTAATATTTTCTATAtgaaaataatatttgatttataTTTAGCTGACTTTAGGACTCCCACAGTCTGTAAAATGTCCAGTAATTTCAACTGATAAATATACCCCAGTgttatacactcttagaaaaaaaggtgctatctagaacctaaacggttttttttggctgtccccataggagaaccatttgaataaccctttttggttccagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601615 lncRNA upstream 45620 61895416 ~ 61895895 (+) True G531252
TU601545 lncRNA upstream 143980 61797329 ~ 61797535 (+) True G531184
TU601541 lncRNA upstream 148267 61792807 ~ 61793248 (+) True G531180
TU601517 lncRNA upstream 177182 61763969 ~ 61764333 (+) True G531156
TU601516 lncRNA upstream 177576 61763684 ~ 61763939 (+) True G531155
TU601704 lncRNA downstream 84131 62042340 ~ 62042547 (+) True G531331
TU601705 lncRNA downstream 84509 62042718 ~ 62042987 (+) True G531332
TU601706 lncRNA downstream 84938 62043147 ~ 62043433 (+) True G531333
TU601707 lncRNA downstream 86076 62044285 ~ 62044504 (+) True G531334
TU601712 lncRNA downstream 93361 62051570 ~ 62051804 (+) True G531339
XM_036980630.1 mRNA upstream 39514 61885833 ~ 61902001 (+) True LOC110526277
XM_021607089.2 mRNA upstream 1078055 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA upstream 1078055 60829575 ~ 60863460 (+) True LOC110526274
XM_036980622.1 mRNA upstream 1188732 60671713 ~ 60752783 (+) False LOC110526270
XM_021607100.2 mRNA downstream 3177 61961386 ~ 61964415 (+) True LOC110526279
XM_021607105.2 mRNA downstream 13278 61971487 ~ 61979525 (+) False LOC110526282
XM_036980635.1 mRNA downstream 67879 62026088 ~ 62032556 (+) True LOC110526284
XM_021607114.2 mRNA downstream 113052 62071261 ~ 62084069 (+) True LOC110526286
XR_005052183.1 mRNA downstream 326161 62284370 ~ 62299748 (+) True LOC110526289
TU598912 other upstream 2169431 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3162498 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3569547 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 3668679 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 3828696 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 13527 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 191564 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 862211 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 1054049 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 1074722 63032931 ~ 63198734 (+) False G532237

Expression Profile