RNA id: TU601621


Basic Information

Item Value
RNA id TU601621
length 2860
lncRNA type sense_over
GC content 0.37
exon number 2
gene id LOC110526278
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61903571 ~ 61960273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacctcccagccTAACTCTCTTCAGCTTCTTCCAGTGTCCCTTTGTGCATGACAGGCAGTATCAAAAGAGAATTACTTTCTGGACCGAAGCTGAAAGTTTGGGTTGAACCTAAACTCAGTCTGCgccttcctctccttcttcctcttggATAAGCTGTGTCCCCAAACTCTAAGATGTTACCCGCACCACTCCTCACTCTATCTCCCTTTACTACTGGGGCACTGCCATGAAATCACAGGGCTACTACTGGTAAACTGGGGCTGGGGGAGTAATTGTCTTTCTGTCCAGAGGGAATTCACTTCATACTGTAAATTGGTCTCAGGTTAGGAGGCATTCAAGCATTTAGGAAGCATTATCAAAGTCTGTTTTTAGCACAAAAAACACTAGAGGTAACCTGAAGTGGTTTCACATAGATATTCTGTATGTACTGTTGGATTTTGTTATGTTGTAATGGAATTGCTCTTGATAAAAAACACAATAGAAAGAATGACTAATTTCACATTCCATCACATATCCATATGGTTTTATTAATATTTTCTATAtgaaaataatatttgatttataTTTAGCTGACTTTAGGACTCCCACAGTCTGTAAAATGTCCAGTAATTTCAACTGATAAATATACCCCAGTgttatacactcttagaaaaaaaggtgctatctagaacctaaacggttttttttggctgtccccataggagaaccatttgaataaccctttttggttccaggtagaacacttttggttcCATGTCGGaccttttccacagagggttctacctggaacccaaaagggttctacctagaaccaagaAGGATTtgcctatggggacagccaaagaaaccttttggaacccttttttccaaGAGtggtattttttaaataaattatttttgTGGTATACGGTTTTATATGGTTTCTGGATATAAACACGTTTATATGAGCTGGAAATACTGTCTATTCTCCATAATTAGGTTTCCCCTCTGGGGGCTGAGGTCCATTTAGATCCCAACTGCTCTGTTTCAGTCTCCGAACGTGCACTGCCACacattcctcttctctctctcactcctcctcttTTTGTGGAGAGCTTTTTTGGGTGTTCACAAGTGAAATTACTATGAACGTGACCCATTCGCCAGCTAACATCAAAGTACAATATAGCTTGTAGCAGAGATACAATGGTATTTGACAATTGGTGGGAAGGAAAAATTATATTTGCACACAGTTTACTGTGATGAGGGATTTACTATACTTTAGTACTGACATCTTCGATATTATAATAAATAATCCATTTGTTTTTTCAAAATATTATCCAGCCTAAACACATTGTATTTTTCAATATGCTGGAATATTTTTAAGGCTTCCAAATTATTATTCAATATGTTGTTTTTGGTTGTGAGTATTCATTGTACAGATAAACTCTCTTCAGTTGAAATGTTTTTTACATGTCTGTCATCCATGTATAAATGGTATAAAAATGGCTGTGCCTGCCAAGCACTACGTCTAAGACTGTTAGACTGCTTAACATTGTAGCCACAATAACTTGCAACTGATTAACAAATCAAgagctttccttttccaaatagCTTGCTATTTTTCAAGGCTTGTGGTACTTTGTTGTTATTCAGATACGTCTATGTTCATCATTGAAACCCCAGAAAAAGCACACAGCGGAAAATGTGGCATAATGTCCATATTTTGTGTATACAACCGTATTTGTGGAGTCAGTTGGTATCTCTGTTCCAGCCAACTCTTTCTCATAGTCTCCCTCATTTATCTTACCAAATCCCTTATTGTGAAGTGAAATCCTCACTGATGAACCCTTAAAGAATATTTTATATATGACTTAGTCGCATGATTGCATTGCTGGCATTGTGGATAAAAGTTATAAAGAGATGAGTATTTATTTAGAATAGCTTTAACAATAATGTGTATAACTGTGGAAAGACTACTATTAAATAGTTGTTGTGAGATTCACCAGAATGTAGATGTACTACAGCACAGATGCTTCGCACTAGACAAAAATGTCTAAAGATTAAAGATCAACAGGTTATTTTTCTTGCGTTACATTCTTGCGCCAATCATCATCTAATGGATTTGACTTTGAGAGAGTTTGTTAAATGGCTTTTAAAACCAAATGCTGTTCTCGGCACTTGTTAATACATAGTCTATTTGTGGTCAGAATTGTCATGTCAAGCCCTATAAATAAAGCAATGTTTGGGCTAAAAATGATGTGTTAATAACTTGACAATGAGCATTTGTGCTTATTATTATGTAGCTACTGCAAATCTAGCGATGCTATACAATAATAATGATGGGCTTGTGTTTCACCAACTGAAATCTAAAAGTGCAATGCAGTGAATAGCACAACGTATTAGATTGTGTGCATtgtgacacacacagaggtatCTAGAAATGCAACTTTACCTGCCTTTACAAGTCAGTAGAAATGCTCTGTAACTGTGTTGGAAGACCTAGTCCAATACCTGTTGAGGTAAAACTGCAATGCGGTTCACTCTGGTCTTACATGCTGTTTTGTCTTTGTTGTTTACTTCCTTTTGGTAGCACAATAAGTACATGTTCAACataaatgtgaaataatgtgTAATACTGTACATGTACACTTCCAATGTATAGTTTCCCTATAAGTCCCACTGTTGTGCACAACTGTCCTGTGTGACAAAGATTCTTGTTTCCTATAATCACAGTCATCGACGTAAATCCATGTTTTGTATTAGAGCTTTTATTCATTTCTTATATTGGGGAAAGTAAATAAATTTGACCTCTATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601615 lncRNA upstream 7676 61895416 ~ 61895895 (+) True G531252
TU601545 lncRNA upstream 106036 61797329 ~ 61797535 (+) True G531184
TU601541 lncRNA upstream 110323 61792807 ~ 61793248 (+) True G531180
TU601517 lncRNA upstream 139238 61763969 ~ 61764333 (+) True G531156
TU601516 lncRNA upstream 139632 61763684 ~ 61763939 (+) True G531155
TU601704 lncRNA downstream 82067 62042340 ~ 62042547 (+) True G531331
TU601705 lncRNA downstream 82445 62042718 ~ 62042987 (+) True G531332
TU601706 lncRNA downstream 82874 62043147 ~ 62043433 (+) True G531333
TU601707 lncRNA downstream 84012 62044285 ~ 62044504 (+) True G531334
TU601712 lncRNA downstream 91297 62051570 ~ 62051804 (+) True G531339
XM_036980630.1 mRNA upstream 1570 61885833 ~ 61902001 (+) True LOC110526277
XM_021607089.2 mRNA upstream 1040111 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA upstream 1040111 60829575 ~ 60863460 (+) True LOC110526274
XM_036980624.1 mRNA upstream 1150788 60671708 ~ 60752783 (+) False LOC110526270
XM_021607100.2 mRNA downstream 1113 61961386 ~ 61964415 (+) True LOC110526279
XM_021607105.2 mRNA downstream 11214 61971487 ~ 61979525 (+) False LOC110526282
XM_036980635.1 mRNA downstream 65815 62026088 ~ 62032556 (+) True LOC110526284
XM_021607114.2 mRNA downstream 110988 62071261 ~ 62084069 (+) True LOC110526286
XR_005052183.1 mRNA downstream 324097 62284370 ~ 62299748 (+) True LOC110526289
TU598912 other upstream 2131487 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3124554 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3531603 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 3630735 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 3790752 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 11463 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 189500 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 860147 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 1051985 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 1072658 63032931 ~ 63198734 (+) False G532237

Expression Profile