RNA id: TU601664


Basic Information

Item Value
RNA id TU601664
length 5144
RNA type TUCP
GC content 0.40
exon number 7
gene id LOC110526282
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61971487 ~ 61979527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTAGCTGGTTCTTTGAAATTTAACAACATGACAGAGGACTGTTCCAAAACAACCAGTAACATCCCTTCGTTAACCATGGAGGTTGATACTGCTTTTCTCCGATCCTTGAGGGGTGTCCTTAAATTAGTAGAGATGGGGACTATGTTTGTAGCATTTGTGTGTTTTGCGGTAGCATCCAGGCCCAAATACATTGCAGCTACATGTATGGAGTTTGTGATCACATTCTTCCTGCTTCTGCTGTACACGCTGAAGTTGAACAAGAAGCTGACTCTGTTCTTCTGGCCTCTCGTTGATTTGTTCAACTCACTGTTTGCAGCAGTCTTCATACTTATCCTGAGTCTGATAGCAGTGTCCACTTACACAGTGACAGGGACCCTGGGTGGAGGGATAGTGGGTTTCATAGCAACAGGCCTGTGGTGTGTGGATGGTTACATGCTTTTCAAGAGGGTCACATTCAACCAACCAAGAACAGCAGCAACTGGCACTGTGAAGTGAAGACACCACAATTGTCTCCTCCCATGCTCACTCTCTTATGTCAGTCCTTCCATTTATAGGTGTaggtttaaaggggcaatcagcagttgaaacaataacaaagcttgGCTCCGGCCCATTTTGGTAAAAACCTGAAGGATATGTggatggagaaatgtaaccactctcaaattcatagacagagcaatgtatgcaaggactgaccatcaatgttatcaacatgatagttttaaccatgtttcgaggctatatagtgtttgtttacattttgtttgtttacaattattggagtaaaacaagcttatattttgggttctgatggtgtATGAcatttgaactaagctcatgaggcatttatataTGTGTTCATATCATTAAtttctatataaaaaaaatggatgtatcaactgcagattgcccctttgtTTGTATAGCTTCATCCATGCAACAACACAATTATCATGTATATAAAATAAGTACACCTTTGAAACCTAGGCCTGTATAAGGTTTTGAACAATGTCAGGTTACATGTAGGCCTACCTAGTCTATTTCTGCTTTATTCTAAAGTAATGTTTCTATTGCATTTTGAGCTGTTTATGACGTTCCCATAAAGttaaaacatattatttataaaACTCGAGGGATACAGCACAACAATTTTAACAAATACATTACAGTATTTTAGTTTTGACGCATATTAGCATGCACATAGCCCAGTCCGCCCAGCATAAGGGTCCAACATCTCTAGAATGCAGATGTTGAGCTTTTGTGAACTACGTTTTCGCATTGTCATTATTTCCGTTTCCACTTCAAGAAGCAACACGCTTTTTCGAGGCTTCTCATTTTCCACTCTTTCAACTCTTCCAGCCCGCTGGATCTGTAACCATTACTGAACTCAAACTTTATCTTTGCAATGGGGGACATCGAAGCTCCCGATACGACTGGACCGAGCCAAAGTGTCCTTCAAACTATTCTCCCAATCGCCAAAGAATTCGCATCTTCAAGGAAAGGACAACTTCTTATTGCAGAAGTGGTAACGTAGCATTTCAAAGAAGATATTAGTGTCATTTATTTCCATTGCTTCTTCCGAATACTTTTCTTCAACGCTGCCAAGACAAGCAGATGCGTAGAAGTTTAGATGACGGGGGCGGGGTGCACTCGATTTAACGGGTTTGTGCTATTCAGTGTTACACATTTGAATgctgaaaaatatgtttttgttaggAATAATTTATGCTATTGTATACCAGCTGTTTAGGTAAACTCTATGGAAAACACAACCATTGAATTCTGCTAATTTCTATTGAGATCAGTGTGTCCATCACACGGTTCTCATTTTGTTTTCGTCAAAGGAGCTAAAAAAAGATTTATGAATTAGAGTTagccacacattttttttttttagtttggaAGGTTTTAAGTTTACGACTGATAACCTTTTAATTCAGGTGAGATGTATACCAGTTATACGAAAGACAATGCATATGAATAATTTGAGACATATAGCCTGTAAACAATCATTCATATTCATGTAGCCTTGTGTAGGCTAATTCATGTTAACACAAGCAAGCAATATACCTTACATACAACTGTAATGTATTCTATACTTCATGTGGTCAGTCTACTGTCGCACTTTTGCGTGTATTACTGTAATACTGGATATCTACTAATAGGTTTTGACATGATGTGCAGTAGCCCATTGTAGGGACACGTTTGCACATGCAATTAAACAAAAATGATCATGGTAAAAATtcatttcaaagagagagtttgcTCAAATTACAAAGGGTTGCAAATAAATGAACTGCATTCATTCTTGATAATTCAATGATGATGGATTATTTCAAACCTCAGATATCAGGAAGTGAAGCAAGAGTGCGTCTGCTTAGATATCTTTACTGTAAAAGGGGTCATCACCGAGGATTTGAACCGAATGAACTCAAAATATGTTGTTATCATGGACCCTCCTATGCCTGGCATGTGAGATTCAGTTCATGGATGTGCTGCAGAAAGCAATGATCAACCCTTTCAGTCTCTACTTAACTGACACTGCTGGAGGGCATGTAGCCCAACAGCCATACTCTATGGAATAGAGGGCTCTGGCTGACTGGCGCTATAAGGTAAAGAAATCAGTCTCCAAGAACAATGCAGCCTCTTTACACACACTTAGAATATGATCCTCTCCCATGTTTGCGCTAGAAACCACACGGGTGCTACTATGACTTTAACCATTGGAAATGGATGGAAACACTCACAATGAAATATGCTGGTTTTAGTAGTGGCTCAAGACAGCTGGAAAACATATGCAGAGATTTCCCTGATCGTAATAGCTGGAATGACAATAATGCTGCTTAAGTAATTTAGTTTGTCGCTTGTGGCGTTCAATTGACAAGAAATGTGTCATGCCAGAATTCTCAGAAGCTGTTAGATTCCAAGATTCCTGGAGAATTGACCTTGTTGCTTTACTATCTATTCAAGGACATATTTGGTAAGAACTGTTCCTGCTATGCAGAAACATAGCAGTGTGTGTCTGAGATGAGAAACGTTAGTCATGTCAAGGTCAGACAAAATGTCTGATAAGCAGAAGCACAGTTTTGCTGTGCCTTGTGAAGATATTCAATGTTATTCGATGACGAAACACATTCTAAGTGTAAGATAGGTGAACAGTGTGTTCAGGGTTGTATCTATGAAAGCTGCAGTAGCAGTCTGTGTTGCATTTGGGGGAGTTCCCTACCCAAGTCGAGCCATGTCTGTGGTTTTGATGACCCAGTGGAACAAAGACAAGATGGCTCTCTGTGTAGAATGACAGTGCCTGGGCTTGTCTTGTCCAATGATGTTGGCCGGGGGAACTCAGGACAAGGGGGTGTAGGAAAACAAGCACTATCACCAGAAATGCTGTACAAAGTAAACACAAACTTGTGATTCGTCGAGAGACTGCATGCTGATAACAAAGACTTATTCCGATCTTTAAATCACAAAGGCAGTTGCATCTTTCAGGATTTGTGCTCAACCAGACAAACATGTTTCATGATTAGCTAAAGTGAACAATTACGTTAACACAATTGTGTATAAACAAGCAAAAATTAATGTACAGTATAGGCTTGTAGTGTatctgtgagtgtctgtgtatATTAACTGTCATTCAACAGCTACATCTCCTTACAGCTTGAGACAGGAAATGTAATAGCTTCGGGGCACTGCAACATTTCTTGAAAGGGAGATTTTGGACCAAAATAACTTTAGTATGCCTTCACTGCATTCTATTGGTcaatttctccatctctccctccctctgtcttctccgcCAGGCTCTGTCCCTCATCACGTTCATCTGTTTTGTTGCGTCCACGGCAGCAGCCTTTGTCACAGCACCCTTGATTGAGTTCCTGGCtgccctcttcctcctttttgcCTATTCCACCAAATTCAATGAGCGATTTAAGGGATTCCACTTTCCCCTCATGGATTTTCTGCGCTGTGTCAGTGCGTCCATCATCTTTTTTATAATCTCCATAATATCAGTTTCCAAGTTCACCGACGGGGCCTCTAAGGCAGCAGGGGTGTTCGGGTTCATTGCCACCATTGTTTTTGCGCTCGATTTCTACTTCATCTTTAATGACCTGGCTAATTTCCTCAAACAAGGAGGGGACTCGGGTGACGACCCACCAAGAACCTCAGAGTACAACGACTCAGACTCTGACTCAGACTGAAGAGATTCTACCCCagggaccgtgtgtgtgtgtccaatctACCATGCCTGGCAGGAAGACAGCCATACTGCAGACATCAACGTTTTCCTGAAGGATTCACATTTAATTTGAAACTGATGTGAAAACAGGTTTCCAATCTGTCTTTAGCGCTTTGGAATGCTGACACATACAATCAATTACAGTTACAGTATTATTTTCCAAATGCGCTAAAATTGCCCAAACTCTGAAATACATTTCTGAAGCTGGGAATGAACTGTGGTAGTTTTGGTGATGGCTATTGGTTTGCAGTTGCTCAGCCTCCATAATGCCAAGAGGAGCATGGGGAACAAAGGCAGATTGACACTACATTTAAATGGAAGAATCTGGAGAAATTCCCTATGTTTTTATAAGGTTTACATAATTGAAAAGATTGGCAGCTGGTTGGCTGGTTACACCATCTGTCCAATCATCATGGCTTTGCTTGATTTTTCCATTTCTGGTAACCTTTATTGAAAATGTTCCTATATCTGATGTGATATCCTTGCATTACAATCATTTTGTGACAGATCCATGTTCACCGAGCTGAAAAGACTTACTGTGCATGGCACTTAGCGACTCTTACCGGACTGCCCAAATGGccacttcctgtttgaatttGGATTTGTCCGCGGAATGTTTTCTTTTCTACCAATTCCAAAAACTTTTGATAGTGGAAAAGCACTGAGACTTTTGTGGTTGTGTTTTGAAAAGTAAACTGCAAATGTGGTAGGACTGCATTCATTCATAAATGGTACACCAACAtgttttcttatttaaaatgGTTCCTATTAAGGTTTTCTTACCAGGTTTGTACATCAAACATTTATCAATTTTGCAGGTCATGTAAAGAAAAGAAGAAAGGAATCAGTTGATTTTCAGCCAGTGTAAGCTTTACTTTGTTTAATAAAATATTAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601621 lncRNA upstream 11463 61903571 ~ 61960273 (+) True LOC110526278
TU601615 lncRNA upstream 75841 61895416 ~ 61895895 (+) True G531252
TU601545 lncRNA upstream 174201 61797329 ~ 61797535 (+) True G531184
TU601541 lncRNA upstream 178488 61792807 ~ 61793248 (+) True G531180
TU601517 lncRNA upstream 207403 61763969 ~ 61764333 (+) True G531156
TU601704 lncRNA downstream 62813 62042340 ~ 62042547 (+) True G531331
TU601705 lncRNA downstream 63191 62042718 ~ 62042987 (+) True G531332
TU601706 lncRNA downstream 63620 62043147 ~ 62043433 (+) True G531333
TU601707 lncRNA downstream 64758 62044285 ~ 62044504 (+) True G531334
TU601712 lncRNA downstream 72043 62051570 ~ 62051804 (+) True G531339
XM_021607100.2 mRNA upstream 7321 61961386 ~ 61964415 (+) True LOC110526279
XM_021607098.2 mRNA upstream 13527 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA upstream 13527 61941515 ~ 61958209 (+) False LOC110526278
XM_036980630.1 mRNA upstream 69735 61885833 ~ 61902001 (+) True LOC110526277
XM_021607089.2 mRNA upstream 1108276 60815583 ~ 60863460 (+) False LOC110526274
XM_036980635.1 mRNA downstream 46561 62026088 ~ 62032556 (+) True LOC110526284
XM_021607114.2 mRNA downstream 91734 62071261 ~ 62084069 (+) True LOC110526286
XR_005052183.1 mRNA downstream 304843 62284370 ~ 62299748 (+) True LOC110526289
XM_021607117.2 mRNA downstream 348826 62328353 ~ 62346632 (+) True LOC110526291
XM_021607118.2 mRNA downstream 367240 62346767 ~ 62349795 (+) True LOC110526293
TU598912 other upstream 2199652 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3192719 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3599768 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 3698900 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 3858917 58110906 ~ 58112819 (+) True G526547
TU601786 other downstream 170246 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 840893 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 1032731 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 1053404 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 1329006 63308533 ~ 63343755 (+) True G532489

Expression Profile