RNA id: XM_036980635.1


Basic Information

Item Value
RNA id XM_036980635.1
length 2811
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC110526284
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62026088 ~ 62032556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACAGTCCTAGATTGCACCTCAGGGAACGAGGAGGACTTTGGTGCAGCTTTCAGTCGCAAGATTCTTTCTATTATCAGTCCGTGCTCAGTCTTGCAAGGGAATACATCAGCTCCTCGACTCTCCTTGCCGTTTGGGTTTAAGGCAGAAATCCAGGAGACACCATGGGAGGCAAGCTGAGCAAGCGGAAGAAGGGGTACGATGTCAGCGACCCAAAGGACAAGAAGGAGGAGATTACTGTGGCTGCTGTGAGTGCCGTTGAGGCCGTGACCCATGTTGTGGAGAGCAAAGCACCAGCTCCGGTCGCTAAGTTGGCAGCGAAGACTGCTCCTAAAGTGTCTGCTGCGGTGGAGGGAGCAGTGGAGTCGACAGTGGTAGCCATCACAGAAGCGACAGAAGAGGCACTGTCAGCTATAGAGGCCGTGGCCAAGGGGGCCACCGCAGAGCCAGCGGCTGTACCAGATGAACCTGTGGCAGCACCGGCAGAACCAGCGCCAGCAGCAGAAGAACCAGCGACTTCAGAAGAACCAGCCACAGCACCAGAGGACCCAGCGCCAGCTGCAGCACCAGAAGAACCTGCAGCCTCAGGAGAGCCAGTGGATGCACCGGAAGAACCTGCAGCAGTAGCAGAGGAACCAGCCGCAGCACCAGAAGAACCTGCAGCCCCAGAAAAGCCAGTGGCGGCACCGGAAGAGCCTGCGCCAGCAGCAGAAGAACCGGTGGCTTCAAGAGAACCAGCTGCAGCACCAGAGGACCCAGCGCCAGCTGCAGCACCAGAAGAACCTGCAGCCTCAGAAGAGCCAGTGGATGCACCGGAAGAACCTGCAGCAGTAGCAGAGGAACCAGCCGCAGCACCAGAAGAACCTGCAGCCCCAGAAAAGCCAGTGGCGGCACCGGAAGAACCTGCGCCAGCAGCAGAAGAACCGGTGGCTTCAAGAGAACCAGCTGCAGCACCAGAGGACCCAGCGCCAGCTGCAGCACCAGAAGAACCTGCAGCCTCAGAAGAGCCAGTGGCAGCACCGGAAGAACCTGCAGCAGTAGCAGAGGAACCAGCCGCAGCTCCAGAAGAGCTTGCAGCTCCAGAAGAGCCCGTGGCAGCACCGGAAGAACCTGCAGCAGCTGAGGAACCAGCGGCATCACCAGAGGAACCTGCGGCAGCACCAGAGGAACCTGCGGCAGCAACAGATAAAACAGAGGCACCGGAAGAACCAGCGGCACTAAAGGAACCAGCGGCTGCACCAAAAGAGCCTGCAGTGGAAGAGCCTGTACCAGAAGAGCCTGTACCAGAAGAGCCTGCAACAGCACCAAAAGAACTTGCACCAGAAGAGCCTGCAGCAGCCCAAAAACAACCTGCACCAGAAGAGCCTGCAGTAGCACCAAAAGAGCCTGCAGTGGAAGAGCCTCCATCAGAAGAGCCTGCGGCAGCACCAAAAGAACCTGCACCAGAGGAGCCTGAGGCAGCACCAAAAGAGCCTGCACCAGAAGAGCCTGTGGCAGCCTCTGTGGAGCTAGCTGCAGCACCAGAAAATGCTTCTGAGGCTACAGAACAAGCCACAGAAGTGACAGCCGAGATTACAGACACTACAGAACCAGAGCCTGCCGCTCCAGAGCCTGAAACAGAGACTGTTACAGGGAAGGCCCCAGAAACTGAGGCTGTGGTCGAGGCACCAGTAGAGGCAGAAGCAGCTTCACCCGCCCCGGAGGAGGAGCCTGCATCAGTTGCAGAAGCCGTGTCAGAGTCAGCCACAGAGGCAGCCGCAGAGCCAGAGGCAGATTCCATCCCACAACCAGCCGCTGAAGAGCTCCCCCTACCTGTAGAAGAATCCGTAGCAGAGCTTGAATCTGAAGCTGCTGATGCAGTAACTGAAGCAGCAGAGCCAGATGCTGCCGACATCGCAGAACCCATCCCGGAGATCATCATTTCAGAATCTGCTGCACCTGCTGCTGCAGAGGAGGCCAGCGCTGAGCAAGAGGAGGCTGTGCTGGACAACAAGGAAGTTGTTTCCTCAGTGGAGGCTACTGCTGAGCCTTCTGCCCCTGAGGTCAATGGGGAGTGTCAGGAGCAGGCGGTCGAGCCGGCTGCCGTGTCTGCCCCGGAGCCACAGCAAAAGGAATGTGTCAATGGCATTGACAAGCCAGAGGATGCCGTTGAGGTGCAAAGTTACTGCGAATTAAAAAAGAACTTGAACCTGCCTGGCGACATCCAGATTCCTGAGGCAATCGGTGAGGCAATAAGTCAGGCTGTAGACTTGGTCTGAAGCTAATATAAATGTGATGTACCTAATGATCCGAAAAAACCTTCAACACAAGCTTCTGAAGATAAATATAAAAATGTCTGTTGTGGCAAACGAGTTTCCGATTAACCAAAAGGAAATACAACCACTCAAGtgtagagagggggagtgagataCATGTAGGAAGAGATGTGAGACATGGATGCAGTGTGCCCTACTGAGTCTTTGTGCCCCACATGTCATTGTAGAGGGGCGGCCTGTGTTTGCAGCATTTGTGGTGAGATGAAAGCCAGCGAAATTTGAGGGATGAGTATAGGAAAACAGGACAACAGAGCAAAGAAACGTGACATTGGAAATGTTGAATGGAATGAATAGTCTTGTCTTTGTGTGTGAGGCTGATGAatattaaaaatgttttttttttggaatAGTATCCAATAGTGATCTAATTTAGACATATCCTTTCCTTAACTATATGAAAAAATAATGGATGAAAAGTTTTGGCCTTTTATAGTGGTGCAAACATTGAGGAATGTTCATTGATGGCTTGGAGAATAAAAAAAGACTGTTATACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601621 lncRNA upstream 65815 61903571 ~ 61960273 (+) True LOC110526278
TU601615 lncRNA upstream 130193 61895416 ~ 61895895 (+) True G531252
TU601545 lncRNA upstream 228553 61797329 ~ 61797535 (+) True G531184
TU601541 lncRNA upstream 232840 61792807 ~ 61793248 (+) True G531180
TU601517 lncRNA upstream 261755 61763969 ~ 61764333 (+) True G531156
TU601704 lncRNA downstream 9784 62042340 ~ 62042547 (+) True G531331
TU601705 lncRNA downstream 10162 62042718 ~ 62042987 (+) True G531332
TU601706 lncRNA downstream 10591 62043147 ~ 62043433 (+) True G531333
TU601707 lncRNA downstream 11729 62044285 ~ 62044504 (+) True G531334
TU601712 lncRNA downstream 19014 62051570 ~ 62051804 (+) True G531339
XM_021607105.2 mRNA upstream 46563 61971487 ~ 61979525 (+) False LOC110526282
XM_021607100.2 mRNA upstream 61673 61961386 ~ 61964415 (+) True LOC110526279
XM_021607098.2 mRNA upstream 67879 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA upstream 67879 61941515 ~ 61958209 (+) False LOC110526278
XM_036980630.1 mRNA upstream 124087 61885833 ~ 61902001 (+) True LOC110526277
XM_021607114.2 mRNA downstream 38705 62071261 ~ 62084069 (+) True LOC110526286
XR_005052183.1 mRNA downstream 251814 62284370 ~ 62299748 (+) True LOC110526289
XM_021607117.2 mRNA downstream 295797 62328353 ~ 62346632 (+) True LOC110526291
XM_021607118.2 mRNA downstream 314211 62346767 ~ 62349795 (+) True LOC110526293
XM_021607120.2 mRNA downstream 345316 62377872 ~ 62386332 (+) True LOC110526295
TU601664 other upstream 46561 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2254004 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3247071 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3654120 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 3753252 58272079 ~ 58272836 (+) True G526628
TU601786 other downstream 117217 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 787864 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 979702 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 1000375 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 1275977 63308533 ~ 63343755 (+) True G532489

Expression Profile