RNA id: XM_021607114.2


Basic Information

Item Value
RNA id XM_021607114.2
length 2893
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110526286
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62071261 ~ 62084069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATCATCCTTCCCAACCTCCACTCCCAGTCTTCATCAACACTGCTCACACACCAGCACTTCATTTTCGGCACGCCATTTATCCCATCATTTCGTACCGTCTGGGCTGTGAGTCGAGAGTCAGTCAGCATATAGATAAGGTGAATCTAAGCGGAATCCTCGCAATGACAGGGCATCACTGGGGATACGGAGAGCAGGATGGTCCAGATGCATGGCACAAAGACTACCCCATCGCCCAGGGCAATCGCCAGTCTCCCATAGACATAGTTCCTGAGGACACTGTATACGATGCCAGCCTGCCTCCCATATTCGTCTCCTACGACCACTGCAACTCAATCAACATCTGCAACAACGGCCACTCTGTGACCGTAGAGTTTGATGACACCGATGACAAAACAGTACTCAGGGCAGGCCCCCTTGACAACGCCTACCGGCTGAAACAGTTCCACTTCCACTGGGGCGGGAAGGGCAGCCATGGCTCAGAGCACACTGTCGCAGGGAAGACCTACGCTTCAGAGCTACATCTGGTGCACTGGAACGCAGACAAGTACAAGACATTTGGGGAGGCAGCGGCAGCCCCCGATGGCCTGGCTGTCCTTGGCATCTTTTTAGAGATCGGAGATGAACACAGAGGTTTACACAAGCTAACAGATGCTTTATACATGGTGAAGTTTAAGGGAAGCGTTGCAGATTTCAAAGGTTTCAATCCAAAGTGCCTCCTACCTAACAGCCTCCACTTCTGGACATACCCGGGTTCCCTGACCACTCCCCCTCTTCACGAGAGTGTCACCTGGATCGTTCTGAAGGAGCCAATCATAGTCTCAGAGAAACAGATGGGAAAGTTCAGGATGCTGCTCTTCAacggagaagaggaagaggacaggaAACGCATGGAGAACAACTTCCGACCCCCTCAACCCCTGAAAGGCCGGAAGGTGCTAGCATCCTTTGACTAACTTGACTGCAAATAACCTCCTGGTAGCATAGCCTAACATATGGTCTATTATATGTCAGAGTGAATGTCTGAATAGACTTTCTTCTCAACCTTGAATAGTTTTACTACTGATGATGAATATAGAACAAGGGGTATGAAGCATCACATCTCCCTCTAATGGTCAATTACTTTCAACCGCACTTTAATTGAATGTCAAATGCAGATATCGACGTTTGAAACAGTCATAATGACTACTATGTGCCCTCTGCACAGTTCTCTATTTTTAAACATAGTAGTCATCTGTAACATTTTTCTGAAGTGAAAGATATTGCTCACACAGCCATCCAGACATTGCCTTGACAGAAAACAGTATAATGTATGTAACTCTAGTGAtttcttttatttttaaaaatctgattGTACCTTTTTCAAACAAACGTCAACGTGGCCTCATGGGTGTAGTGAAAAGCATTTAAGTCAATGAACAATCCCCCTCCACCCCAAACACACGCGCACAAACGTACACACACCATTTTCTGTCCACCCAGTGGATTGCTGTTGTTTAGGCTGCTATTGTTTCTATGCAAGGTGCTATATCTTCTTCCCAAGGGTTTAGCCACACCTTATCTAACAATGGAAGATGATGCCAGTGCTCTGTAACATGTTGTCTGAATCCTGACTGCCTCTTGGTGGTAATCTATGTTGATTCATATTTAGATGGGCTGGATCCACATCGTCCCACAGTAGTTGCCATAGATCCTTTAACCCAACACTCATAACTGGAGGTGGAATTGGATTTAAATTGCTGAACTGTAAATTAAGAGTTTACTCTGTACTTTCCCTGTGCCCTGACAGCCCAGTGATTGATGGAATGGCACTAGGGCACTCTCAGCTGTACATCAGCTTTAAAGATGCCAAGCATGCGCTGAATAGAGTATTGAGTTCATGTTGGGTCAAAACAGTTCCACTTTCGAGAAATGAAGGAGAGGgcgtacacacacagtacattctGTATGGAAATGGGACACTTCTGTAATGGGTTCATGTCCATGTCTTTGTGTGCTGCTCATTTCTCCTGTGCCACAGAACAGCCTCCTCCCTACAGTCGGTTCCTACACTACTGTATGGTACGTTGTTGCAGGCAGGGTGACGCTCCAGTTCTTTTACGATAATGGAAGGTCTCAGTAAGTGAAGGTCATAATGATTAATAGATCCCCACTGTAGCGACAGTTGTAAGAGACATTGCTCCTCGGTACACTATGTAATTCCTAATGAAAGTCTGCCAGGCCTCTGTGTGTTTGAGTAGTTTTACATAATGCTGTTCCATAGATAGAGGTGGGCGTTTACCCATATGGACAAACTGGTAGGGGGACACTCCTCTGCTTAGTCCCACCTATGGGAATTAAGCCTTGGAACTGGCACTTGAGCTATCTGTTTCAAACAATTGATATTGTTTTGTAAATTGTAGTTCTTCAATAATATTAGATTGATTCAGTACTGTTTCAGAAACAAAAGATGAGATTAAAGGAAATCTATCAAACGCTTTGTTGCCATTAAAATGCTTGTGTGGAGTATACAGATTACCTTTTTAAAAGTATGTTTATGACTAGTTCAAGTGTGGTTCCCAGAATTAGTCCTCACAATGGTGACTGCTGCAGTCTCTAAACATGAGTCACTGCTGCCACTGTGTAGTCTAACAGAGAGCTGGGAAGTAAGCGTTTGGAAACAGTTCCTAATGAGCCCCATGCAAGTACAAAATGCACTACAGTGGATTACTTTTAAACCCAACATGTATAGTTTTTGCCGTCCATTCCTGACTCAAACATTTCAATCAGTCCACTGAAATCAGTAAACACAACAGTTTACATGGTCACTGATTTTCTTGACAGCTATTGATGTGTGAGGAATTTCAGTATGCATTGAACCTTGATCCTGGTACAAAtgtacactacccttcaa

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601719 lncRNA upstream 14114 62056916 ~ 62057147 (+) True G531346
TU601718 lncRNA upstream 14464 62056564 ~ 62056797 (+) True G531345
TU601714 lncRNA upstream 18053 62052998 ~ 62053208 (+) True G531341
TU601713 lncRNA upstream 19155 62051869 ~ 62052106 (+) True G531340
TU601712 lncRNA upstream 19457 62051570 ~ 62051804 (+) True G531339
TU601791 lncRNA downstream 76452 62160521 ~ 62183351 (+) True G531410
TU601806 lncRNA downstream 237452 62321521 ~ 62321951 (+) True G531418
TU601902 lncRNA downstream 417718 62501787 ~ 62506601 (+) True G531510
TU601943 lncRNA downstream 476794 62560863 ~ 62561065 (+) True G531544
TU601903 lncRNA downstream 480959 62565028 ~ 62565767 (+) True G531511
XM_036980635.1 mRNA upstream 38705 62026088 ~ 62032556 (+) True LOC110526284
XM_021607105.2 mRNA upstream 91736 61971487 ~ 61979525 (+) False LOC110526282
XM_021607100.2 mRNA upstream 106846 61961386 ~ 61964415 (+) True LOC110526279
XM_021607098.2 mRNA upstream 113052 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA upstream 113052 61941515 ~ 61958209 (+) False LOC110526278
XR_005052183.1 mRNA downstream 200301 62284370 ~ 62299748 (+) True LOC110526289
XM_021607117.2 mRNA downstream 244284 62328353 ~ 62346632 (+) True LOC110526291
XM_021607118.2 mRNA downstream 262698 62346767 ~ 62349795 (+) True LOC110526293
XM_021607120.2 mRNA downstream 293803 62377872 ~ 62386332 (+) True LOC110526295
XM_021607123.2 mRNA downstream 376252 62460321 ~ 62464733 (+) True LOC110526297
TU601664 other upstream 91734 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2299177 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3292244 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3699293 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 3798425 58272079 ~ 58272836 (+) True G526628
TU601786 other downstream 65704 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 736351 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 928189 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 948862 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 1224464 63308533 ~ 63343755 (+) True G532489

Expression Profile