RNA id: XR_005052183.1


Basic Information

Item Value
RNA id XR_005052183.1
length 3572
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC110526289
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62284370 ~ 62299748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGAATAGATTTGAACGAGAGAGACGTTTCCCCTCTACTCGTAAACTGATTACTTTTTACCTCTTGGTGGAACGACTGTCCAGAAATTATTGAAAACAAATGGGGGCATTTTGGTTTGTGGAGCTGGGTGTATTAATATTATTTCTCCAGGCGTTCAAACCAGGGTTGTCGGAGGAGTCAAAATGTCTTCCAGGTTTCAATTCAGAAATGTACATTTTCAAAGTGGAAAGAAATCACTTACGAAGTGGCCGGAGTCTTGGAAAAGTGGTTTTTGATGACTGCACCATCCGTACCAGCTTTCTCTTTCACTCCGAGGATTCACGCTTCAAAGTAGATGGCGACGGGACGCTGAAACTGAAGAGGGGGCTGACTCTGCATAATGGACATAAGGAGTTCTATGTCTCTACCCATTCCAAGGGCAAGAAGTTCACGGTTCCAGTCAGAGTGCTGCATGAGGCCAGACATGGCCACCACCACAATCACCATGAGATGACCACCCAGCCCAAGCCAGGAGCAAGTCTGTCTCTACCTGTTCTGAACTTCCCTAAGTCTTCAGGAGGTCTGAAAAGAAGGAAGAGGGACTGGGTCATTCCTCCCATCAACTTCCCAGAGAATGCCCGAGGCCCGTTCCCCAAGAATATGGTGCAGATCAAGTCCAGCAATGATAAAGAGGTGAAGATCcagtacagcatcactggcaCTGGGGCAGACCTACCTCCTGTGGGACTCTTCACTGTGGACAAAAACTCTGGAATACTCTATGTGACCCAGCCTTTGGACAGGGAGAAAAAAGACCAATACATTCTCCTAGCCCATGCTGTTGCAGTGGGTGCAGGTATAGCTGAGGATCCCATGGAGATCATTGTGAAAGTCATCGATATGAATGACAACAAACCTGTATTTACACAAGATCCATTTACGGGAACAGTTCATGAGGCATCAAAACCAGGTGATGAGGTCATGCAGGTAACGGCCACTGATACTGATGAGGAGGGCTCTGCCAATTCTGATGTCAGATACACCATTCTCAGTCAGGAGCCTCCACTACCAAGCCCCAACATGTTTGTCATCAACCCTGTGACTGGAGGGATTCGGGTTAACGCACCTGGGTTGGACAGAGAGAAATTTACCAAATATACTTTGGCAATCCAAGCTGCCGATACGGAGGGAAATGGCCTTACCAGCTTTGGCAAAGCCATCATTACAGTAACGGACAGCAATGACAACGCGCCACAGTTTGTGACGCCTTCGTACACCGTGTCAGTCCCAGAGAATAAAGTGGATGCCTTGGTGGTGAAAATGCCAGTGACTGATGGAGATGAGCCTCACTCCTCTGCCTGGGCCACCACCTACAAGATAGTTGACGGGGACCCTCAAGGCCTTTTCAATGTGTGCACAGGCCCTAGCAAGCTGGAGGGCACCATTATGACACCTGGAGCAAGTCTGTCTCTACCTGTTCTGAACTTCCCCAAGTCTTCAGGAGGTCTGAAAAGAAGGAAGAGGGACTGGGTCATTCCTCCCATCAACTTCCCAGAGAATGCCCGAGGCCCGTTCCCCAAGAATATGGTGCAGATCAAGTCCAGCAATGATAAAGAGGTGAAGATCcagtacagcatcactggcaCTGGGGCAGACCTACCTCCTGTGGGACTCTTCACTGTGGACAAAAACTCTGGAATACTCTATGTGACCCAGACTTTGGACAGGGAGAAAAAAGACCAATACATTCTCCTAGCCCATGCTGTTGCAGTGGGTGCAGGTATAGCTGAGGTTCCCATGGAGATCATTGTGAAAGTCATCGATATGAATGACAACAAACCTGTATTTACACAAGATCCATTTACGGGAACAGTTCCTGAAGCATCAAAACCAGGTGATGAGGTCATGCAGGTAACGGCCACTGATGCTGATGAGGAGGACTCTGCCAATTCTGATGTCAGATACACCATTCTCAGTCAGGAGCCTCCACTACCAAGCCCCAACATGTTTGTCATCAACCCTGTGACTGGAGGGATTCGGGTTAACGCACCTGGGTTGGACAGAGAGAAAATTCCCAAATATACTTTGGCAATCCAAGCTGCCGATATGGAGGGAAATGGCCTTACCAGCTTTGGCAAAGCCATCATTACAGTAACGGACAGCAATGACAACCCTTCGTACACTGTGTCAGTCCCAGAGAATAAAGTGGATGTGACTGATGGAGATgatcctcactcctctccctgttccaccACCTACAAGATAGTTGACGGGGACACTCAAGGCCTTTTCAGTGGGAGCACAGGCCCTAGCAAGCTAGAGGGCATCATTACAACAGCTAAGCCGCTTGACTTTGAGAAGAAGAACAAGTACACTCTGCTGGTCACTGTGCAGAATGAAGTCCCATTCGCAATCAGCCTGCCCACCTCCACTGCTACTGTTGTAGTGAATGTGGAGGATGTGAATGAAGCTCCAGTCTTCACCCCAGTGGAGAAGATTATCAGGAAACCTGAGGACCTCCCTGTTGACAGTGACCTGGTTCTGTACACCGCCACAGACCCAGACACTGCAAGGAATCAGAAAGTCACATACAAGATACGCAATGATCCTGCTGGATGGCTAAATATCAACAAAGACACTGGGCTGATCAAAGTCAAGAGCCTCATGGACAGAGAATCCACTTTTGTCCAAGACAACAAATACTCTGTTGTTGTTCTGGGCATCGACAACGATGAAATCCCGGCAACTGGCACTGGTACCCTTATcatagagctggaggatgtgaATGATAATGCTCCAACCATCGACGAGAGTGTGATCAGGGTCTGCAACAAGGAGTCCTCCCCACAGCTGCTGTCAGTCACTGATAAAGACAGCACGGGCTTTGCTGCTCCATACACCGTACAGCTTCAGGGGTCGTCCCATTCTAGCTGGACTGCCAGAATGAACGACACAAAGACGGGCATTATCCTGACACTGAAGACTGTGTTGGACAGTGGAGATTACATGGTTGTCCTGAGAGTGTCTGACAACCAGGGCCTGCACCATGACAGCACCATCCAGGCCTCAGTGTGTGACTGCAAAGGAGCGGATGTTCAGTGCACCGATGAAGCTGCAACAGGCTTCGGCCTCTAGCAGTCTTACTACTCCTATTGTTGTCTCTTCTGCTGCTCATGTTCCTGCGGAAGAGAGGTGGTGAGAAGGAGCCTCAGGAGGACGATGTCATCTACTACTATGACgaggagggaggtggtgaggaTGACCAGGTGAAAGGGACTCACCAGACTAGCTCAGAACAAGCCCATTAGGTTCTCCCTATAAAGACTATCCTTAAGCATGACATTTATTTTACTGAAAGCCTAATCAGCCTTAGGATTTTTTTGTTAACTGAGATTAATTAACAAGCTCAATAATtgcttttaaaaatgtttgaTAAACATCTAAGTTTGGGTATTTTTTATTATAATCAAATTGTTTTTTCTTTCTTGCTTCTGAAGAGTGAATTATGTATAAAGGATATATCCCTTTAGTACAATGATGGACATGTGATGGGTTGTCATTTATTTAATAAAACTAACATTTATTCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601791 lncRNA upstream 101019 62160521 ~ 62183351 (+) True G531410
TU601719 lncRNA upstream 227223 62056916 ~ 62057147 (+) True G531346
TU601718 lncRNA upstream 227573 62056564 ~ 62056797 (+) True G531345
TU601714 lncRNA upstream 231162 62052998 ~ 62053208 (+) True G531341
TU601713 lncRNA upstream 232264 62051869 ~ 62052106 (+) True G531340
TU601806 lncRNA downstream 21773 62321521 ~ 62321951 (+) True G531418
TU601902 lncRNA downstream 202039 62501787 ~ 62506601 (+) True G531510
TU601943 lncRNA downstream 261115 62560863 ~ 62561065 (+) True G531544
TU601903 lncRNA downstream 265280 62565028 ~ 62565767 (+) True G531511
TU601950 lncRNA downstream 273124 62572872 ~ 62573091 (+) True G531551
XM_021607114.2 mRNA upstream 200301 62071261 ~ 62084069 (+) True LOC110526286
XM_036980635.1 mRNA upstream 251814 62026088 ~ 62032556 (+) True LOC110526284
XM_021607105.2 mRNA upstream 304845 61971487 ~ 61979525 (+) False LOC110526282
XM_021607100.2 mRNA upstream 319955 61961386 ~ 61964415 (+) True LOC110526279
XM_021607098.2 mRNA upstream 326161 61915719 ~ 61958209 (+) False LOC110526278
XM_021607117.2 mRNA downstream 28605 62328353 ~ 62346632 (+) True LOC110526291
XM_021607118.2 mRNA downstream 47019 62346767 ~ 62349795 (+) True LOC110526293
XM_021607120.2 mRNA downstream 78124 62377872 ~ 62386332 (+) True LOC110526295
XM_021607123.2 mRNA downstream 160573 62460321 ~ 62464733 (+) True LOC110526297
XM_021607127.2 mRNA downstream 190334 62490082 ~ 62491686 (+) False LOC110526300
TU601786 other upstream 132152 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 304843 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2512286 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3505353 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3912402 58318920 ~ 58371968 (+) True LOC110526933
TU602760 other downstream 520672 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 712510 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 733183 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 1008785 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 1038488 63338236 ~ 63339498 (+) False LOC100750227

Expression Profile