RNA id: XM_021607118.2


Basic Information

Item Value
RNA id XM_021607118.2
length 2006
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110526293
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62346767 ~ 62349795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttggcaTTTTTTGCTATACCATGTGATAGAAGGTTTGTAGCATAAAGAAAAACGAGTATAGAAAAAATAAATACCGGTTAGGCAATATTTTGAGTAATTATAAAGCCAACCAGGCAGGGCCAATTCAGGTCGCCTGTCTACAGGCTTGCAGACTACTGTGTTGCGATGCACCTGTTTTGTTGGGGTATACTGATCGACGCAGAGGTGCCGCCCCCATGCACTTGTCCTTTCATTCTAATTGGTCCGACAGGGTGTGTATGCTAATTCTCAGCGACCGCTGCACCTGACTCTCCACTCCACCGAAGAATGCAAGGCAAAAGACAGCCTCCAAGTAACAGCTATTTATTCTACAGGTCATCCTACTCAACGAGCACTCACTTGTTACATTATTGCGGCGCTGCAGACTCATCAATAACAGAGCTATATGATAAAGATGCCACGGTCTTTTCTGGTGAAGAAACATCTCACTAATAAGAAGCCAAACTATGGAATTCTGGATTCAAAATCAGACGCTCTCCACACCAGCCTGGTCTATCTTGAGGTACCCTGTTACATCCCCAGCACTCCTCAGCCCCTGGAGGGTTGGCTGCCAGGGCCAAGTCTCATCCCCACACCAGCCTCCATGCACTCTCCCAAGGTAGACAGGCTGCCTTCAAGGGACACCAGCTTGTCCCTGCATAGCTCAACACAGGAAATCACCTACCCCCTGTCAGTGTCTCACAACAATCCGCTAAGAGACTCACAGTCCGGATTTAAGTCCCTGGGAACCATGGAACCCCAGACCTTCATGCTCTCACAGGACTTCAGACAACCGGAGGAGAGGGGCAGCATGCCTAATCCCCTCCTGGGCCTTGTTCACTCTAGTGTTAGTCAGGAGCGCTTTGAATGCTTTGACTGTCACAAAGCCTACTTCACCTTCTCTGGGCTGGCTAAGCACAGGCAGTTGCACTGTGAGTGGCAGTGTCACAAGTACTTCTGCTGCAGGTACTGTGACAAGGAGTACGTGAGTCTGGGAGCTCTGAAGATGCACATccgaacacacacactgccctgcgTCTGCAAGCTCTGTGGGAAGGCCTTCTCCAGGCCTTGGCTGCTCCAGGGACACATTCGCACACATACAGGTGAGAAGCCCTTCTCCTGCCCACACTGCAGCCGGGCGTTTGCTGACCGCTCCAACCTCCGAGCACACCTACAGACACACTCTGACATCAAGAAATACCAGTGCAAGAGTTGCTCCAAAACCTTCTCCAGGATATCTCTGCTCTGCAAGCATGAAGAGGCTGGCTGCTCCCCACTGTCCTGATTCCGTTTACTGCCAGTGCTGCCCACTCTGTGCCTATTGCCTACTTGCCTAGACTATGTCTGGTTCTACTAACATCAGACTTCCCTCACAAAGCACTGGAGATAGACTACTATTGGTGACACGGAGCTCTGACTACTGTATGTTTTTGTTCTCTGACATTTCAAGCTCATGAAATAAGCACAATGGACTGTGTCCAAAGACATTCTTATGTCATATATTTGACATATGAAGTAGTTGTATGACATCAAGACAAAAAAGAGAAAAGTTGTTATCGCATGCTGCCAAAAATACTTGAAATTTAAAGCCTTGAAGTTTTTGATTGTGTTATTGATAATTACCTGTGCCTTTTGAGGAAATGTATAGCTGGAGTATACAATTTTGTATGAACTTTGTTTGTTTAAAGACAATAAATACCTATTTTTGTACAATTGCCTTGTATTAAGCCTAAATATGAAAACATGCATAATCATGTGAGACACGAACCACTGAGATGAAAACACAAGCCCCAGTCTAAGTCAGGAAATATTGAAGAAACCCACTTTTCTAAAATCAAAACAAATGCTGAGTGTCTGCTGTAGAGTACTAGGACTACATGTTATCACTTTGCTATCATTGCCTCAGCATGTTCCTACTTTACGACCATTTCTTGGCATTGTGAGATCACTGGCGAACTGTAAAAATCATCATGGGCGCACAGG

Function

GO: NA

KEGG:

id description
K05706 SNAI2, SLUG; snail 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601806 lncRNA upstream 24816 62321521 ~ 62321951 (+) True G531418
TU601791 lncRNA upstream 163416 62160521 ~ 62183351 (+) True G531410
TU601719 lncRNA upstream 289620 62056916 ~ 62057147 (+) True G531346
TU601718 lncRNA upstream 289970 62056564 ~ 62056797 (+) True G531345
TU601714 lncRNA upstream 293559 62052998 ~ 62053208 (+) True G531341
TU601902 lncRNA downstream 151992 62501787 ~ 62506601 (+) True G531510
TU601943 lncRNA downstream 211068 62560863 ~ 62561065 (+) True G531544
TU601903 lncRNA downstream 215233 62565028 ~ 62565767 (+) True G531511
TU601950 lncRNA downstream 223077 62572872 ~ 62573091 (+) True G531551
TU601952 lncRNA downstream 225090 62574885 ~ 62575117 (+) True G531553
XM_021607117.2 mRNA upstream 135 62328353 ~ 62346632 (+) True LOC110526291
XR_005052183.1 mRNA upstream 47019 62284370 ~ 62299748 (+) True LOC110526289
XM_021607114.2 mRNA upstream 262698 62071261 ~ 62084069 (+) True LOC110526286
XM_036980635.1 mRNA upstream 314211 62026088 ~ 62032556 (+) True LOC110526284
XM_021607105.2 mRNA upstream 367242 61971487 ~ 61979525 (+) False LOC110526282
XM_021607120.2 mRNA downstream 28077 62377872 ~ 62386332 (+) True LOC110526295
XM_021607123.2 mRNA downstream 110526 62460321 ~ 62464733 (+) True LOC110526297
XM_021607127.2 mRNA downstream 140287 62490082 ~ 62491686 (+) False LOC110526300
XM_021607128.2 mRNA downstream 140700 62490495 ~ 62491688 (+) True LOC110526300
XR_005052419.1 mRNA downstream 218254 62568049 ~ 62569967 (+) True LOC118965084
TU601786 other upstream 194549 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 367240 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2574683 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3567750 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3974799 58318920 ~ 58371968 (+) True LOC110526933
TU602760 other downstream 470625 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 662463 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 683136 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 958738 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 988441 63338236 ~ 63339498 (+) False LOC100750227

Expression Profile