Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021607128.2 |
| length | 712 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 5 |
| gene id | LOC110526300 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 62490082 ~ 62491688 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| id | description |
|---|---|
| K20301 | TRAPPC2, TRS20; trafficking protein particle complex subunit 2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU601806 | lncRNA | upstream | 168544 | 62321521 ~ 62321951 (+) | True | G531418 |
| TU601791 | lncRNA | upstream | 307144 | 62160521 ~ 62183351 (+) | True | G531410 |
| TU601719 | lncRNA | upstream | 433348 | 62056916 ~ 62057147 (+) | True | G531346 |
| TU601718 | lncRNA | upstream | 433698 | 62056564 ~ 62056797 (+) | True | G531345 |
| TU601714 | lncRNA | upstream | 437287 | 62052998 ~ 62053208 (+) | True | G531341 |
| TU601902 | lncRNA | downstream | 10099 | 62501787 ~ 62506601 (+) | True | G531510 |
| TU601943 | lncRNA | downstream | 69175 | 62560863 ~ 62561065 (+) | True | G531544 |
| TU601903 | lncRNA | downstream | 73340 | 62565028 ~ 62565767 (+) | True | G531511 |
| TU601950 | lncRNA | downstream | 81184 | 62572872 ~ 62573091 (+) | True | G531551 |
| TU601952 | lncRNA | downstream | 83197 | 62574885 ~ 62575117 (+) | True | G531553 |
| XM_021607123.2 | mRNA | upstream | 25762 | 62460321 ~ 62464733 (+) | True | LOC110526297 |
| XM_021607120.2 | mRNA | upstream | 104163 | 62377872 ~ 62386332 (+) | True | LOC110526295 |
| XM_021607118.2 | mRNA | upstream | 140700 | 62346767 ~ 62349795 (+) | True | LOC110526293 |
| XM_021607117.2 | mRNA | upstream | 143863 | 62328353 ~ 62346632 (+) | True | LOC110526291 |
| XR_005052183.1 | mRNA | upstream | 190747 | 62284370 ~ 62299748 (+) | True | LOC110526289 |
| XR_005052419.1 | mRNA | downstream | 76361 | 62568049 ~ 62569967 (+) | True | LOC118965084 |
| XM_021607139.2 | mRNA | downstream | 156440 | 62648128 ~ 62683202 (+) | False | LOC110526303 |
| XM_021607143.2 | mRNA | downstream | 231757 | 62723445 ~ 62742080 (+) | True | LOC110526307 |
| XM_036980646.1 | mRNA | downstream | 261018 | 62752706 ~ 62947192 (+) | False | LOC110526939 |
| XM_036980647.1 | mRNA | downstream | 261018 | 62752706 ~ 62947192 (+) | False | LOC110526939 |
| TU601786 | other | upstream | 338277 | 62149773 ~ 62152218 (+) | True | G531406 |
| TU601664 | other | upstream | 510968 | 61971736 ~ 61979527 (+) | True | LOC110526282 |
| TU598912 | other | upstream | 2718411 | 59771708 ~ 59772084 (+) | True | G528653 |
| TU597653 | other | upstream | 3711478 | 58778723 ~ 58779017 (+) | True | G527450 |
| TU596824 | other | upstream | 4118527 | 58318920 ~ 58371968 (+) | True | LOC110526933 |
| TU602760 | other | downstream | 328732 | 62820420 ~ 62822616 (+) | True | G532259 |
| TU602899 | other | downstream | 520570 | 63012258 ~ 63014986 (+) | False | LOC110526311 |
| TU602734 | other | downstream | 541243 | 63032931 ~ 63198734 (+) | False | G532237 |
| TU603025 | other | downstream | 816845 | 63308533 ~ 63343755 (+) | True | G532489 |
| TU603064 | other | downstream | 846548 | 63338236 ~ 63339498 (+) | False | LOC100750227 |
