RNA id: XM_021607139.2


Basic Information

Item Value
RNA id XM_021607139.2
length 2020
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC110526303
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62648128 ~ 62685350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCAGCGTCCTGCCATGATCATTTACACCAGCGGCACCACAGGCAGGCCCAAATGGGTTCTCCATACTCACAGCAACATCCAGGCCATGgtTCAGGTTCTAGTGTCAGAGTGGGGCTGGTCCAGAGATGATGTCATCCTTCACACCTTTCCCCTGCACCACATCTATGGCATTGTCAACAAGCTGCTCTGACCTCTCTGGGTGGGTGCCACCACCGTCATGCTGCCTACCTTCCAGCCTCAGAAGGTATGGGAAGTCCTGCTCAGCTCCAAGGTTCTTATGGTGAATGTGTTCATGGCTGTTCCAACCATCTACTCCGAGCTTATCCGGCACTATGAGCAGCACTTCTCCCAGCCACACGACCAGGACTTTGTCAGGGCTGCCTGCAAGGAGAGAATCAGGCTGATGGTGTCTGGCTCGTCCGCCCTGCCTCAGCCCACCCTGTTACGTTGGGAGGAGATCACAGGACACACCCTGTTGGAGCGCTACGGCATGACAGAGATAGGCATGGCCCTGTCCAACCCCCTGGAGGGTCCTCGCAtcccaggtgcagTCGGTGTCCATCTTCCAGGAGTGGAGGTTTGCATCGTCATGACGAAAGCAGCCAGCACCACCGTCGCCGAGGGCAACAGCAGAGAAACTCAGGTATTCAgtgcgttggaggggaaggagggggagctGATGGTGCGGGGAGACCAGGTCTTCACAGAGTACTGGAACAAACCAGAGGCCACCAGGGAGTCTTTCACTGAGGACGGCTGGTTCaaaacagGGGACACAGTGGTCTATACGGATGGAGTGTACTGGATCATGGGCCGCACCTCTGTGGACATCATAAAGAGTGGAGGCTATAGGATCAGTGCTCTGGAGGTGCAGCGACCCCTGCTAGCCCACCCTGATACCACAGATGTGGCTGTGATTGGTGCTCGGGACGCCACCTGGGGACAGAAGGTGACATCGGTGGTGCAGCTGAAGAGGGGGCGGAGCATGACCCTGTCAGAGCTGAAGACCTGGGGCAGTTTACAGGCAAAACAAAGGACATTATTGTCACACTAGTTTTATAGCGCCATGAAGCAGCAttagtaaaaatataaatatatatattaaaactcCCAATAAATGTAGAGGTATTTATTTGCTTATAAATCGTAGATCTACTGTATATTAGATTTGTTGGTAtgtctgctagctagctgtgCTTTGTCATGCTGCTCCATTCCATCAACCATTTGGTGTTCATGGTTCTGTGGTTTTACTATTTGGGAACATGCGAAAACCTTAAATTGTGTGTTTTTGAAAATAGAATTTTGTCCACTGCATTTATTGAATTAGAGGAAGACTTCACTGCTCAGTCCCCCGGGGAGTCATCCAGACTTGTTTATAGTAACTGCTGCTGAAGCCTCAAAATCAATAGCAACCTAactactggagagagagagagagagaggccactcTCATTTAACTGAAGGGGCCAAGGGCAGATGTGGACTGATGAAAGGAGctgaggagagaatagagagagagggaggatgaagaAAGGAGGGATGATGATGGAGGTCTGTCAGGCAGGCAAGCCGTTGCTGTTTCGGTCTTGGCTTCTTTTTTGCTCTAAATGTCACTGTGGTTTTATTTTGCCCCCCAACACTGGCAGAAGACACATGTCCCTTTCTGTGGAATGGCTCaggccatctctctccctccttgtgcccccccccctctcttactCGCTGTCTGtattctttctttctgtctccctctgtctatctccctccatctgtctttgtctttctctctatcactctctgcccaccctgtgtgtgtgtgtgtgtgcgtgtgtctgtttgTGCTGCGGGCTCCATATGGCGTGGGGGTGTGCCGGCCCTACTGCTGTGCCCTGCTGGTCCTGCATGGTGGATTAGCAGCGCTGCCTGTCTGCCAATGACCCTGTCACCCCCCACCCACAGGTGCTGCCTGCGGACGGGCAAGCACAGGGCCAGCCAGGgtgaaggagatggagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601963 lncRNA upstream 54341 62593573 ~ 62593787 (+) True G531563
TU601952 lncRNA upstream 73011 62574885 ~ 62575117 (+) True G531553
TU601950 lncRNA upstream 75037 62572872 ~ 62573091 (+) True G531551
TU601903 lncRNA upstream 82361 62565028 ~ 62565767 (+) True G531511
TU601943 lncRNA upstream 87063 62560863 ~ 62561065 (+) True G531544
TU602694 lncRNA downstream 2949 62686151 ~ 62686431 (+) True G532210
TU602706 lncRNA downstream 20338 62703540 ~ 62703758 (+) True G532222
TU602720 lncRNA downstream 29038 62712240 ~ 62712624 (+) True G532233
TU602721 lncRNA downstream 29526 62712728 ~ 62712939 (+) True G532234
TU602764 lncRNA downstream 29930 62713132 ~ 62713348 (+) True G532263
XR_005052419.1 mRNA upstream 78161 62568049 ~ 62569967 (+) True LOC118965084
XM_021607128.2 mRNA upstream 156440 62490495 ~ 62491688 (+) True LOC110526300
XM_021607127.2 mRNA upstream 156442 62490082 ~ 62491686 (+) False LOC110526300
XM_021607123.2 mRNA upstream 183395 62460321 ~ 62464733 (+) True LOC110526297
XM_021607120.2 mRNA upstream 261796 62377872 ~ 62386332 (+) True LOC110526295
XM_021607143.2 mRNA downstream 40243 62723445 ~ 62742080 (+) True LOC110526307
XM_036980646.1 mRNA downstream 69504 62752706 ~ 62947192 (+) False LOC110526939
XM_036980647.1 mRNA downstream 69504 62752706 ~ 62947192 (+) False LOC110526939
XM_036980648.1 mRNA downstream 69504 62752706 ~ 62947192 (+) False LOC110526939
XM_036980649.1 mRNA downstream 69504 62752706 ~ 62947192 (+) False LOC110526939
TU601786 other upstream 495910 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 668601 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2876044 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3869111 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 4276160 58318920 ~ 58371968 (+) True LOC110526933
TU602760 other downstream 137218 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 329056 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 349729 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 625331 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 655034 63338236 ~ 63339498 (+) False LOC100750227

Expression Profile