RNA id: XM_021607143.2


Basic Information

Item Value
RNA id XM_021607143.2
length 3782
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110526307
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62723445 ~ 62742080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCACTgcccagagaaagagagggagagagacacacagggggTTTGGATTTGAGACATTTGGTTCCATTGCCCAGTACTGTCAGGAACCCTGAGCTTCTCTTAAAACTGGTTTGAGAAAGAGGATCCACCGTGGTCATTGGGTACAGTACGTGTTGGGGTTTGTTGAGAAGATCGCATGCTGGCACAGGAGATGGCATCAAGGGGGTTGGCAGTGCTGTGTGTGCTGGTGgctggccttggtcagGTCGGGAGCAGTGGCCAAGCGGGCAGGGAGGACCTGAACCCAGCGGCCCTGTATCCATGGAGACAGAGGAGCAGTGGGGGTCTGAGCAGGGTGAAGAGGGACTGGATCATCCCTCCAATCAGGGTGCTGGAGAACAGCAAGCAAGTCCCTGAAAACCTGGTCCAGATCAAATCAGACAAGATTTTCACTGGAGAAGTGATCTACAAGCTGGAAGGACCAGGGGTTGACCAGGACCCTAAGGACCTGTTTGAGATAGATGATAAAACAGGCTGGATCAGGAGCATGATTCCCCTggacagagagaaatacagaagCTTCACGCTGAAAGCCTTTGCCCTGTCGCCCagtggagagagactggagaatCCCTCCACCATTGAGATCGTAGTGCTGGATCAAAATGATAACCGGCCCAACTTCTCCCAGAAAGAGTTTGCTGGATCCGTTTATGAATTCTCCGTACCAGGCACATCTGTGATGTCTGTGACTGCGACTGATGCTGACGACCCAACCACAGACAACGCTATCCTGAGCTACTCCATCATTGGCCAGGAGAGCATCCCGCCTCTCCGCATCAACAAGACCATGTTTGGCATCAACAACGAGACAGGGGCCATTTACACACGAGACGTGGGTCTAGACTGGGAGGTGGTTAAAGGCTTTAGGTTGAAACTGCAGGTTGCTGACATGTCAGGCATGGGGTTAACCAGTCTTGCGAATGCAGTCATACATGTGactgacatcaacaacaacccCCCACGATTCTCCCCAGACCTGTACACTATGTCAGCTGTGGAGAACAAAATAGACTTTGTGATTGGCTGGGTCAACGCCACAGACAATGATGAGCCAGGGACAGGAAACTGGGAGACAAAATACACCATCGCCAAGGGCAACCCCTCTAGGAACTTTGCCATTCGCACAGACCCTGTGACCAACGAGGGTATTCTGTCAGTGGTGAAGGCTCTGGACTACGAGTCCCAAGAGGTGTATACTCTGACTCTGACAGTGGAGAATGTGAACCCTCTCAGCATCAAGGCCCCCAAGAACCCTGTAAGCAGTGCCACAGTGGTGGTGACCGTGGTGAATGAGAACGAGGCCCCACGCTTTATTAAAGACCCCATAGAGATCTTGGTTCCTGAGTCTGTGGACCCTGGCACCGTGCTGGCCAGTAACATCGCCTACGATCCCGATAATGCAAAACTCAAGTATGACATACTCAGAGATCCTGAGGGATGGCTTATAATCAATCACGAGACTGGAGAAATCGCAGCCAGGAAACCGTTCAATGTCCTCTCCCCTCACGTCAAGAACAACATTTACAATGCAGTCATCAGAGTCACAGACACAGACGCTGGTGGAATCTCGACCACAGCGTCTCTGGTGATCACGTTGTGGGAGACCAATGACTTCCTCCCTCAGCTGTTCCCCTTGATGGGGACGGTGTGCAGCGAGTCAGGCCGGAAGGCATCTGGTCTGTTCCTGACTGCTGTGGATGAGGACCTGCCCCCTCACGCTGAACCCTTCACCTTCCACCTGCAAGACATTAATGTGTCTGCCAACTGGACCATCATACAGGTCAATGagacaCATGCAGTGCTGCGACCCCTGGTAGAGCTGGAGACAGGGGAATATGGTGTCACTGTGTTGGTGACTGACTCTGGCACCCCAAGTCTCAGTGCATATGCTCAGGTCAATGTGACGGTGTGTCCGTGTGGGAAAGACGGTGAATGTAAGACCGAAGCTGCTGCCATATTCGGAACACGAGTTGGTGTCAGCTTCATCGCCTTACTGGTCATCATGGCCAGCATCGCACTCCTGCTGTTGTTGCTACTCCTGGCTGTAGCCGTGGGTAACTGCAGACGGCATCATATGAAGAAAGGAGAAGGTCTGTTGGTGGGGGATTCAGACGAAGACATCCGTGACAACGTCCTGAACTATGACGAGcagggtggtggagaggaggatgagAATGCCTTCAACATTGACCTACTGAGGAACCCAACGGATGTGGGACCACTCCCAATATCCTACTACCCTCCCGTCTCTGGCATCCCCAGGGGAAAGCAGCCACTCAGGAAAGACTACCCAGACAACCTGCCCTCCCCCTCGTATCCACGGAAACCCCCAGCGGACCCCACTGACATTGAGGACTTCATCAATGATGGCCTGGAGGCAGCAGACCATGACCCCAACATCCCTCCCTATGACACAGCTCTGATCTATGACTACGAGGGTGATGGCTCCCTGGCAGGCAGCCTGAGCTCCATCGCCTCAGCCAGCTCAGACGGCGACCAGGACTATGACTACCTCAACGACTGGGGACCACGCTTTAAGAAACTGGCCAACATGTACGACCCACGCTAAGGAGACTGCCTGGTTATTTAGCTACCAGTACATTTACCGTAGCTTTATCCTcagatgccatctattttctcCTAAACTCCACCCAACTCCATATTCTTCATCATACATCCTCCCTCTTCTTGTAGCTAGAACCTGAGATCATCCTCAGTGTAGGACAGGGTAGGATTTTGACTAGTTGGCAGAGGTTTAGAGTGGATCTCTGTGTTCCTATTCCTTTATGTTTCCAATTGTCTCCGGCAGTGCATTAGCTCAATTCTTTAGGCTCTTTTGACACTATTGTCCTCCTCCAATCCCTCTCTTTGCAACTGTAAAAGGTCACCGTTGTCATTTTCAGGACTATCATGGGTAATGTTGATATTCTCCTCCCAGTTCAGCGACTTTCTGACCGGCTTGAAGAGACAACCACACAGCACTCTGCAACATATGAATGGTTCACCTTGTGCTGAGTGGTATGCGTGTGAATGGcgaagggagggaaggaaacaCATGGTAGAGCATACCAATGAGAGAAGAGAAATATGCACTGTAgtcctccagtcagtcagtccatagAGCCACTTAAAACCAGTGGCCTTGCCAGTCAGGTGTGTCGTCTTGAAGGTTTCTCTAATCATTTTTTGGTTTGTGTTTTGTAGAAAGCTTTTTATGTGAGAGGAATGTAGAGAAAGGTTGACCATGTACTTAAACAGTGATGGCAAAAAGGGCTAAGCATGCTATAAAGGGAAACAGAACGTCTGTGGAATTGTACCCATGTCTGGTATTAACTTTTAAAATACTTTGTGACCTCTACCATATGAAAACATTTTGATTTTCTAAATGCTGTTACGTTTTCctttttttataaatattttgTACATATTTTTTCCATTTCTTTAATTTAGTTTTCCCCTAACATTACATTAATCCTCAACTCCTAAAACAAACTCCACTTGGGAGGTCTATACACTTTGATAATTCTCCTTCAGTTTGACACCTACAATTAAAACATTTGAAGCCAATAACCAATGCTATTACATTTGAGGAGATATGGCTTGGTGGACAGTTTTCCTTCCAACATAAAGCAATACTCAAACTCCTGTGAGAACCAATGGTTTGGATGTgacatttttgttttcttgatTGACATGTATAAATTACTTTACATAATACATAAAAATGTTTCAAAGCA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06809 CDH15, CDH3, CDH14; cadherin 15, M-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602764 lncRNA upstream 10097 62713132 ~ 62713348 (+) True G532263
TU602721 lncRNA upstream 10506 62712728 ~ 62712939 (+) True G532234
TU602720 lncRNA upstream 10821 62712240 ~ 62712624 (+) True G532233
TU602706 lncRNA upstream 19687 62703540 ~ 62703758 (+) True G532222
TU602694 lncRNA upstream 37014 62686151 ~ 62686431 (+) True G532210
TU602772 lncRNA downstream 108 62742188 ~ 62742939 (+) True G532270
TU602786 lncRNA downstream 8228 62750308 ~ 62751415 (+) True G532283
TU602757 lncRNA downstream 10666 62752746 ~ 62788133 (+) True LOC110526939
TU602829 lncRNA downstream 104436 62846516 ~ 62848889 (+) True G532322
TU602832 lncRNA downstream 127349 62869429 ~ 62869862 (+) True G532325
XM_021607139.2 mRNA upstream 40243 62648128 ~ 62683202 (+) False LOC110526303
XR_005052419.1 mRNA upstream 153478 62568049 ~ 62569967 (+) True LOC118965084
XM_021607128.2 mRNA upstream 231757 62490495 ~ 62491688 (+) True LOC110526300
XM_021607127.2 mRNA upstream 231759 62490082 ~ 62491686 (+) False LOC110526300
XM_021607123.2 mRNA upstream 258712 62460321 ~ 62464733 (+) True LOC110526297
XM_036980646.1 mRNA downstream 10626 62752706 ~ 62947192 (+) False LOC110526939
XM_036980647.1 mRNA downstream 10626 62752706 ~ 62947192 (+) False LOC110526939
XM_036980648.1 mRNA downstream 10626 62752706 ~ 62947192 (+) False LOC110526939
XM_036980649.1 mRNA downstream 10626 62752706 ~ 62947192 (+) False LOC110526939
XM_036980650.1 mRNA downstream 10626 62752706 ~ 62947192 (+) False LOC110526939
TU601786 other upstream 571227 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 743918 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2951361 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3944428 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 4351477 58318920 ~ 58371968 (+) True LOC110526933
TU602760 other downstream 78340 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 270178 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 290851 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 566453 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 596156 63338236 ~ 63339498 (+) False LOC100750227

Expression Profile