RNA id: XM_036981769.1


Basic Information

Item Value
RNA id XM_036981769.1
length 3896
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110526308
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62948118 ~ 62965825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACACTGATCTACGAGCAGATAGACTTCCCACCAATGACACTTCGGTTACTCACCGACCTGCCCACTTGGCTGGAGTTGTGCTATCTCATCTAACCTATCCTGCCATGCCCAGCGGTGTGTGTGGATGTCCAACACTACTGAATAACAGCTGTCTCGGCATTGTCTCTAACAATGGACTTTGAAACGAAGATTTATACCAAAATCGGTGGATATGGACGATATAACAGAACTGTTTCCATATTCAGCTGGTTTCCGAATTTTGCTGTGATGCTGAATCTTTTTTGCGACGTTTTTTACACCCTGATTCCCGGGTCGTACCACTGTAAACCCGACCCGACCCTTTTACCTTCGGGTTTTCTTTTCAGTAATTATTCCAGACAAGGGTATCTCAATTTTGCCATACCGTGGGTGAATGGTTCTGGACTGAGTCACTGTAAACTTTATAAGTACCCTAGAAACGTCTCCAACTTCATAGACAGCATTCCAAAGGAGATAGTGCCATGTACGAGAGGATGGGAGTACGACCAAGCTGCTGCGCTTCAGAGCAACTACGTGACAGAGTGGAACCTAGTGTGTGTTGACTACTGGAAGATTCCTCTGCAGCACATCTGCTTCATGACAGGGTGGATTGTGGGATATGTCCTCCTGGGCACAGTGTGTGACTGGTTGGGTCGTCGACAGGGCTTCctgctgtctgtgtctctgtccggTCTGTTAGGAGTAGCTGTGTGTCTGTCCAACAGCCCTGTAGTGTTTCTGCTGCTACGCCTGTCTCAGGGCGCCATGTTGGCTGGGGTCTTCCTATCCTCTTACCTCACCAGACTGGAGCTGTGTGACCCTCCCCATCGTCTCATGGTTGAAATGGTCAGTGGTTTCTTTGCCGTCGTGGCAGAGCTCTTGTTGCCAGGGCTGGCGGTGCTGTGTCGTGATTGGCCAGTTCTTCAAGCAGTGGCAACCTTGCCACTGCTCCTGTTGCTCTCCTATTGGTGTTGTCCATCAGTGTTTCCCGAGTCTCCCCGCTGGCTTCTGGCCACAGGTCAGATCCACCAGGCTAAGAGGTGTCTCCAGATCTTCTCCACCAGAAACAGAGTCTATCTCAGGGAGGACATCTACCCTGCTGAGAACCTGCTCTCAGTAGAGATCGATGCGGAGTACCCAGATTATACCCAGCCTTGCTACCACTCAGTCCTGGAGTTGCATTCCACCCGAGTGATCTGGAGGAACTGCCTCATCCTTAGCTTTACTATgttcATAGGCACAGGCATCCAGTACTGTTTCATCAGGAACCTCCACAGCTACTCCCACAACTTCTACTTTAGTTACTTCCTGCGTGTGGTGACTGGAGCTCTGGGATGtgtcttcctctgcctgtccgtCAACCTCTTTGGTCGCCGTGGTATCCTGCTTCTGTCTGCCATTATCACCGGCCTGTCctcgctgctgctgctggcccTCACACAGTTAACTCTTCTCCTCATCTTTGTGGAGTGCTGGTGTTGGTGCTGTCTGTGCTGGGGCTCCTCTTCTCCCAGGCCCTGGCCCCTCTTCTCCCAGGCCCTGGCCATGCTCAGTGCATTCTTCGCCAGTGAGGTCATGCCCACTGTAGTCCGTGGTGGTTGTCTGGGGCTGGTGCTTGCGTCTGGCTGTATGGGGATGGCTGCCTCCCCTATGATGGAGCTCCAGAACAACAGGGGTTTCTTCCTCCACCACGTCAGCTTTGCCTCCTTCGCTGTCCTCTCGGTGCTGTCCATCATGCTGCTGCCGGAGAGCAAGCGCAAGCCGCTACCCGACTCCCTGAAGGATGGAGAGGGCCAGCGACTgccccctctcttcctgtcccgtGAAGACAACCTGCCCCTGCTCTATACCCGGCGTGGAGCCTCCGAGTACAACCCTGATAACTACTCCCGCCTGGTCACCGCCACCAGGAAGATGCTCATCAAAGACAATTTACCCTATAAGATCGTTGTGCCCTCCCAGTCCCCACTGCTGCCTTCCAACAGCGAGGTACACTGAATACTGGAGGAAGAGGCACTAAGAGAGGACTTGTCTTAGCAGCCTCTAACTACCATCACCCGTCCTCCTCTCCCACAGAGAGACCTCACCTCAAACCCACTGGATATCTCTCCCTGGTATCATCCTGGGCTAGCTGCCTGGTTCCCTTTCACCAGACTGAGACGGTGTGATCCAGACTCGTATCGCTCTGAACGACGGGTCTTCTTGGATATTTGGAAGGGGAGGAGAGTTGGAGATGTGTGTATTTACTGTGTccgtcttttttgttgttgtgccaaGTGTTTCAAACAATACGACAGAAAcgatctgtgtgtgtgcttgtttttgtACTGATTGAGATCTGCTGTTTCTAAGACTGTGTTAACGCCCTCTCTTCTCCAGGCTGTGCAGCATGGGAGCTATGGCTTTATTAACCACTAAGGCTCACTTGAGAAGCATTGCTTGTCCACTTAACTGGTGACTCATGCTTTTCAGTACTGCTGTCTTGTGCCTGTGACTGCAAAGAGAAAGAGCAGGGTCCTGACTGTTACTTAATCTGACTCATTGGTGACTCAACGAGGGGACCTCACAGATAGAAGTCAGTTTGGCTCAAACTGGAATGTATTGTAGCCAATtgttatattttttggggggttggggGGACTCAATGAAGTATCAGTCACTGATAATATGACCTAAGCAATGAAAGGTCATTTCATCCTGTCCACTTGTTGGACGTGTTTTAAGAACATGAGATGTTGTCACATGATGATTTGCACCAGGAACAAAGTTGTTAAAATGATTGAAATGTGACCTCTACTCTGAGTCATTATAACCTTTCAAATGGGACTTTACCTCATTGTGCTTAGTTGTATCACGTCCATCTCTCTGCCTTAAAcggttcctgttcctgttcaaaGAAGGCAGTTGCTATGATACTTAACATTCTATAAGTAatttaattaaatacatttttatcaaCTATTAAACCACATTTCACTGCTCTTTTTGGTATTTGACTGTGGTTTGAGGTGTTGCCCTTCTTGGCCTGGCTGTGGAACTGTTTTACGTTATTGTTGGATAGGATGTTTACACTCTAACTCATTCGCTCTTCCTTTTTCATCCCCCTCTTTTGCTTGCATGGGAACATAGCCCCTTGTACAGTACGTTTATTAGGAAAAAATGTAAATGCAGCTGCTCAACTTTTCCCCACAGCGGACAATATTCTGTCCTTCTAAAAAATACTTATATTAAATTACATGTACAAAGTATTATATTATTTTCAGCTATGAATAACTTGACTGACTCTCGAAAGTTCATATTGAGTTATCTGGAAGCTGAGGCCATACAATGTTGATCTACTGTTTGCCCCTCttcacataaataaataaatagaataaCAGTGACCTCGAGCATCAAGTAAAGAGATGCTTAACTTCCTTTCAGATTATGGTAAACGAACAGACCCGGTCAGGACATTTTGAACAATGCTATTCTGCTTTTGACATCAATGGGGTCTTAACGAGGTCACTGGGTGTTGAACTAAGGTTGCTATAGTATTTTTCTGAAGCTGATCCACTTCTATTTTTAACTTTTATTTGCTTGCTCGCCTCACTTTTCAAAAATGAAATCCGTTTAACAGTAAGTTTGAATGGCCCAAAACTGAAAATGTTTTGAGTTCTGCCCTGTGCTTCATATGTCTGATACAATGCTTACCACAAGACGGTGCTGTTCTCTtataaatgtattgaatgtacaAAATCCACCATTTGTCTTTCAACTTTGTGTTATGTTTTTAACAAAGTcagatttttgtattttgaagaATTGGAAACGTATTTCAGTGTAAATAAAATAAGATGGCTTGGAGTAAGTCCAAACACACCATTGCCAAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602846 lncRNA upstream 59665 62887817 ~ 62888453 (+) True G532338
TU602832 lncRNA upstream 78256 62869429 ~ 62869862 (+) True G532325
TU602829 lncRNA upstream 99229 62846516 ~ 62848889 (+) True G532322
TU602757 lncRNA upstream 159985 62752746 ~ 62788133 (+) True LOC110526939
TU602786 lncRNA upstream 196703 62750308 ~ 62751415 (+) True G532283
TU602881 lncRNA downstream 12446 62978271 ~ 62978487 (+) True G532370
TU602883 lncRNA downstream 15788 62981613 ~ 62981835 (+) True G532372
TU602885 lncRNA downstream 18113 62983938 ~ 62984188 (+) True G532374
TU602892 lncRNA downstream 30717 62996542 ~ 62996878 (+) True G532381
TU602727 lncRNA downstream 67106 63032931 ~ 63198734 (+) False G532237
XM_036980646.1 mRNA upstream 926 62752706 ~ 62947192 (+) False LOC110526939
XM_036980647.1 mRNA upstream 926 62752706 ~ 62947192 (+) False LOC110526939
XM_036980648.1 mRNA upstream 926 62752706 ~ 62947192 (+) False LOC110526939
XM_036980649.1 mRNA upstream 926 62752706 ~ 62947192 (+) False LOC110526939
XM_036980650.1 mRNA upstream 926 62752706 ~ 62947192 (+) False LOC110526939
XM_021607149.2 mRNA downstream 39847 63005672 ~ 63015537 (+) False LOC110526311
XM_036981770.1 mRNA downstream 153402 63119227 ~ 63120960 (+) False LOC118965038
XR_005052190.1 mRNA downstream 198027 63163852 ~ 63170077 (+) False LOC110526312
XM_036980657.1 mRNA downstream 198040 63163865 ~ 63175505 (+) True LOC110526312
XM_036981771.1 mRNA downstream 235577 63201402 ~ 63210821 (+) True LOC110526940
TU602760 other upstream 125502 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 795900 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 968591 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3176034 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 4169101 58778723 ~ 58779017 (+) True G527450
TU602899 other downstream 46433 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 67106 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 342708 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 372411 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1803322 64769147 ~ 64776336 (+) False LOC110526344

Expression Profile