RNA id: TU602743


Basic Information

Item Value
RNA id TU602743
length 1994
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC110526308
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62948118 ~ 62965825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAAGCGCAAGCCGCTACCCGACTCCCTGAAGGATGGAGAGGGCCAGCGACTgccccctctcttcctgtcccgtGAAGACAACCTGCCCCTGCTCTATACCCGGCGTGGAGCCTCCGAGTACAACCCTGATAACTACTCCCGCCTGGTCACCGCCACCAGGAAGATGCTCATCAAAGACAATTTACCCTATAAGATCGTTGTGCCCTCCCAGTCCCCACTGCTGCCTTCCAACAGCGAGGTACACTGAATACTGGAGGAAGAGGCACTAAGAGAGGACTTGTCTTAGCAGCCTCTAACTACCATCACCCGTCCTCCTCTCCCACAGAGAGACCTCACCTCAAACCCACTGGATATCTCTCCCTGGTATCATCCTGGGCTAGCTGCCTGGTTCCCTTTCACCAGACTGAGACGGTGTGATCCAGACTCGTATCGCTCTGAACGACGGGTCTTCTTGGATATTTGGAAGGGGAGGAGAGTTGGAGATGTGTGTATTTACTGTGTccgtcttttttgttgttgtgccaaGTGTTTCAAACAATACGACAGAAAcgatctgtgtgtgtgcttgtttttgtACTGATTGAGATCTGCTGTTTCTAAGACTGTGTTAACGCCCTCTCTTCTCCAGGCTGTGCAGCATGGGAGCTATGGCTTTATTAACCACTAAGGCTCACTTGAGAAGCATTGCTTGTCCACTTAACTGGTGACTCATGCTTTTCAGTACTGCTGTCTTGTGCCTGTGACTGCAAAGAGAAAGAGCAGGGTCCTGACTGTTACTTAATCTGACTCATTGGTGACTCAACGAGGGGACCTCACAGATAGAAGTCAGTTTGGCTCAAACTGGAATGTATTGTAGCCAATtgttatattttttggggggttggggGGACTCAATGAAGTATCAGTCACTGATAATATGACCTAAGCAATGAAAGGTCATTTCATCCTGTCCACTTGTTGGACGTGTTTTAAGAACATGAGATGTTGTCACATGATGATTTGCACCAGGAACAAAGTTGTTAAAATGATTGAAATGTGACCTCTACTCTGAGTCATTATAACCTTTCAAATGGGACTTTACCTCATTGTGCTTAGTTGTATCACGTCCATCTCTCTGCCTTAAAcggttcctgttcctgttcaaaGAAGGCAGTTGCTATGATACTTAACATTCTATAAGTAatttaattaaatacatttttatcaaCTATTAAACCACATTTCACTGCTCTTTTTGGTATTTGACTGTGGTTTGAGGTGTTGCCCTTCTTGGCCTGGCTGTGGAACTGTTTTACGTTATTGTTGGATAGGATGTTTACACTCTAACTCATTCGCTCTTCCTTTTTCATCCCCCTCTTTTGCTTGCATGGGAACATAGCCCCTTGTACAGTACGTTTATTAGGAAAAAATGTAAATGCAGCTGCTCAACTTTTCCCCACAGCGGACAATATTCTGTCCTTCTAAAAAATACTTATATTAAATTACATGTACAAAGTATTATATTATTTTCAGCTATGAATAACTTGACTGACTCTCGAAAGTTCATATTGAGTTATCTGGAAGCTGAGGCCATACAATGTTGATCTACTGTTTGCCCCTCttcacataaataaataaatagaataaCAGTGACCTCGAGCATCAAGTAAAGAGATGCTTAACTTCCTTTCAGATTATGGTAAACGAACAGACCCGGTCAGGACATTTTGAACAATGCTATTCTGCTTTTGACATCAATGGGGTCTTAACGAGGTCACTGGGTGTTGAACTAAGGTTGCTATAGTATTTTTCTGAAGCTGATCCACTTCTATTTTTAACTTTTATTTGCTTGCTCGCCTCACTTTTCAAAAATGAAATCCGTTTAACAGTAAGTTTGAATGGCCCAAAACTGAAAATGTTTTGAGTTCTGCCCTGTGCTTCATATGTCTGATACAATGCTTACCACAAGACGGTGCTGTTCTCTtataaatgtattgaatgtacaAAATCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602873 lncRNA upstream 7493 62955965 ~ 62956206 (+) True G532362
TU602846 lncRNA upstream 75246 62887817 ~ 62888453 (+) True G532338
TU602832 lncRNA upstream 93837 62869429 ~ 62869862 (+) True G532325
TU602829 lncRNA upstream 114810 62846516 ~ 62848889 (+) True G532322
TU602757 lncRNA upstream 175566 62752746 ~ 62788133 (+) True LOC110526939
TU602881 lncRNA downstream 12579 62978271 ~ 62978487 (+) True G532370
TU602883 lncRNA downstream 15921 62981613 ~ 62981835 (+) True G532372
TU602885 lncRNA downstream 18246 62983938 ~ 62984188 (+) True G532374
TU602892 lncRNA downstream 30850 62996542 ~ 62996878 (+) True G532381
TU602727 lncRNA downstream 67239 63032931 ~ 63198734 (+) False G532237
XM_036980648.1 mRNA upstream 16507 62752706 ~ 62947192 (+) False LOC110526939
XM_021607149.2 mRNA downstream 39980 63005672 ~ 63015537 (+) False LOC110526311
XM_036981770.1 mRNA downstream 153535 63119227 ~ 63120960 (+) False LOC118965038
XR_005052190.1 mRNA downstream 198160 63163852 ~ 63170077 (+) False LOC110526312
XM_036980657.1 mRNA downstream 198173 63163865 ~ 63175505 (+) True LOC110526312
XM_036981771.1 mRNA downstream 235710 63201402 ~ 63210821 (+) True LOC110526940
TU602760 other upstream 141083 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 811481 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 984172 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3191615 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 4184682 58778723 ~ 58779017 (+) True G527450
TU602899 other downstream 46566 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 67239 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 342841 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 372544 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1803455 64769147 ~ 64776336 (+) False LOC110526344

Expression Profile