RNA id: XM_021607149.2


Basic Information

Item Value
RNA id XM_021607149.2
length 1935
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110526311
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63005672 ~ 63068991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAAATATATCATTACATTTCCTCCCAAACGAGCGACATTGTGGCACTAACTGATGGTTGTATGGGGGAGTTGTTTATGGCTCTATCACTTTGTACGTGCTGAAGAAAATGAAAGCATAAATCAAACAAAATATAGTTATGACACCGTAATCATCTAATTGGACTGTATTCTATCTATGTCCATGGTCTTGTCAGAATGACCCTATCATGGCATTGTCTGATGTCATATCTAGGGATTTCCTAATTTGCGGGGTGTTGCTTAGGGTactatcctaagttgataactaTATGATAAGTCTACAGCTGTAAGACACTCGTTTTgggcagtctacagggatgacctatggACTTCTGAGAAGAGAACTGGTGAGTGCTGTAGCTGTAGAGTTAAAGGCCTCAAAATAAATGTTCAACTTTACTAAGGCTGGTGTTACCCACAGACCAACGTCATGACATACTGCTTGGCTATTTAAGGTCTGTAGGAAGCCAGACCATCTCATACTTCCCTTCTCACAGATAGTTAGTcagaaaaacagacagagagacaggcagttaGGTAGACGAGCAGACAGACATGGCCAGGCTGGACGTGACAGAGACCTTCCATCACATCTCATTCCCTGGGCACATTCACACCCAGGACTCCCTGAACTATGCCCTCCACTTCCAGTTTCAGGACAGGGACACTGTCATCGCCACCTACCCCAAATCAGGGACTACCTGGATGCAGGAGATTGTCACTCTTGTGAAAAACAGAGGGGACCCACAACTCTCCAAAACTGTGCCCAACTGGGCACGAGCCCCCTGGCTGGAACAGCATTACAGTGCAAAGGTGCTGGAGGCCACCCAGGGGCACCGAATCCTCACCACTCACCTGCCCTACAACCTGCTGGCTTCTGCACTCCAGGGCTCCAAAGCTAAGGTTATCTATGTCGCCAGAAACCCCAAAGATGTTGCTGTGTCATATTACCACTTCCATAAAATGGCCAAGTTCCTCCCAGAACCCAATTCATTTGATGAGTTTCTGGATAGTTTCCTGGAGGGATCAGTGAGTTATGGGTCCTGGTTCGATCATGTGAAAGGCTGGACGAGTCAAGCAGGAGTCTTGGCAAATGTTCTTTATATCTCTTATGAGGAGATGTGGCTGGACCTGCAAGGCTCGATGGAGAGGATCAGCTCTTTCCTGCAGTGCCCCCTGGTGGGCGAGGAGTTAACCAACTCCCTGAGACACTGCAGCTTCAGCAGCATGAGCGATAACGCCATGGTGAACTACACTCAGATCCCAAAGGAGATCATGGACCACAGCAAAGGCAAATTCATGAGGAAAGGTATAATCGGTGACTGGAGAAACACTTTCACAGAGGAGCAGATTGGTATTTTCGACACCGTCTACAGCTACCAGATGAAAGACTGTCCCTTGACCTTCATGTGGGAGTGTCCTCCTGAGGCCtgtggggaaggaggaggaggacaggcctCTGGGGTATCAGGATAGGGCCCTTATCCTCCATGACGCCGGAGACTGATGGATACGCTTCATACAAGTCCTGGATTCTCTCACTGATGTTCTGTGTTTTTGTGAATGTACATAtaatgtacacaacacaatatagTAAAACTATATAATGAAATTGATATGTTAATATAACAAAAAATATTTGTGTGTGAcctattgttgttgtagttgggTTTTTCCACCTCtataaaaaatctaaatgttaCAGTTAACTGAATGAGAGTGAGTTTCTCCTCCATCTTGGCTTGTGCTGCAATAGCTAGATGAAGGGACACGAGGGGGACATTTAACTCCCTGACATTGacacattggaaaacctcccagtTTGTGGCAGTGCATCAAGCAGAAGGGATGATATATTAACTCCAGAAAGGCTGACGTGTACATAAAAAGCTGCTGTTACATCAGTCACATAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602892 lncRNA upstream 8794 62996542 ~ 62996878 (+) True G532381
TU602885 lncRNA upstream 21484 62983938 ~ 62984188 (+) True G532374
TU602883 lncRNA upstream 23837 62981613 ~ 62981835 (+) True G532372
TU602881 lncRNA upstream 27185 62978271 ~ 62978487 (+) True G532370
TU602743 lncRNA upstream 39980 62963699 ~ 62965692 (+) True LOC110526308
TU602727 lncRNA downstream 17394 63032931 ~ 63198734 (+) False G532237
TU602730 lncRNA downstream 17394 63032931 ~ 63090490 (+) False G532237
TU602731 lncRNA downstream 17394 63032931 ~ 63090490 (+) False G532237
TU602912 lncRNA downstream 34413 63049950 ~ 63099165 (+) True G532399
TU602901 lncRNA downstream 41265 63056802 ~ 63068991 (+) True LOC110526311
XM_036981769.1 mRNA upstream 39847 62948118 ~ 62965825 (+) False LOC110526308
XM_036980648.1 mRNA upstream 58480 62752706 ~ 62947192 (+) False LOC110526939
XM_036981770.1 mRNA downstream 103690 63119227 ~ 63120960 (+) False LOC118965038
XR_005052190.1 mRNA downstream 148315 63163852 ~ 63170077 (+) False LOC110526312
XM_036980657.1 mRNA downstream 148328 63163865 ~ 63175505 (+) True LOC110526312
XM_036981771.1 mRNA downstream 185865 63201402 ~ 63210821 (+) True LOC110526940
XM_021607163.2 mRNA downstream 226849 63242386 ~ 63243598 (+) False mcee
TU602760 other upstream 183056 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 853454 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1026145 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3233588 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 4226655 58778723 ~ 58779017 (+) True G527450
TU602734 other downstream 17394 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 292996 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 322699 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1753610 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1774785 64790322 ~ 64847104 (+) True G534453

Expression Profile