RNA id: TU602901


Basic Information

Item Value
RNA id TU602901
length 1536
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id LOC110526311
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63005672 ~ 63068991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagaaaattgtGAACCGAAACCGAATCCGAATCGACCTCAAAAAACACTTATCGCTCAGCACtagttccacgtagaaccctctgtggaaatggttctacatggaacccgaaAAGTTTCTATCAGGAACCAAAAGGGTTTTACTTAGAACCAAAAAGGTTTAGTCAAatggttctcttatggggacagatAGCACCTTTTTATATGAGTGTAGAGAGTGCACAAGACATAAGGCATATAAGTCGCTTGGAGTGGTGAGAGACAGAAGGGGGAGGGGATGTGGGGgaaagagactgggagagagaagcTGCTGTGTGTGGACTGTGGCTTGCAGCTGCAATTGTGGAAGAGCGAGAAAGCGTGCTCAtgtgagagagactcagagactaccagagagagagagagagagagagagagagagaaagcaaaagagggtgagagagagacagacagagatagagaaggCTGAAACACAGAGAGTGAAGTAAATAAAGAATGCAAGAAAGACTGTACAGTGACGCAGTGCTTCTCTGTCTACTTTAGGTGTACGAATTCTGTAGAGGCAGTGTGATACAAGGACTATACATTTCCTGTCTCCTATCAGCCGGATTTACTCCGAAAAGGACATCAATGACCATTGGACCATATACTTCTCCACAATATTGCAGGCACTAAAGGTGGACTTTTAGTGCAGTGACAATGCAGGAGCATCTCTCAGTCCAGCACATGGGCACCAGGAGCACACATTTCTCCTAGTAGTGAGGTTTGTCCTGGGCCTCGTCCGGACTACCATGACTGACCTCCTGGCCAACCTGAGTGTTCCATGGGGCACACAGGCGATTGTGTGCCCCAACCTGACAGCTGTGGCCTGCTGAACCGTACCCTGGCCGTGGTGTTTATGGTCAGTCTGGCCTTCGCCATAGTGGTGGGCAACGTGGTCACGCTCACCGTCTTCATGCAGACAAGACAGGTATAATCGGTGACTGGAGAAACACTTTCACAGAGAAGCAGATTGGTATTTTCGACACCGTCTACAGCTACCAGATGAAAGACTGTCCCTTGACCTTCATGTGGGAGTGTCCTCCTGAGTCCtgtggggaaggaggaggaggacaggcctCGGGATCAGGATAGGGACCTTATCCTCCATGACGCCGGAGATTGATGGATACGCTTCATACAAGTCCTGGAATTCTCTCACTTTTTGTGAATGTACATATAATGTACACAACCCAATATAGTAAAACTATATAATAAAATTGATATGCAAATATAACAAAAATATTGTGTGACCTATTTGTTGTTGTAGTTGGGTTTTTCCAActctaaaaaaatctaaatgttacAGTTAACTGCACTAGCTAGATGAAGGGACACGAGGGGGACATTTAACTCCCTGACATTGacacattggaaaacctcccagtTTGTGGCAGTGCATCAAGCAGAAGGGATGATATATTAACTCCAGAAAGGCTGACGTGTACATAAAAAGCTGCTGTTACATCAGTCACATAGCTTGACTCCGAACAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602892 lncRNA upstream 59924 62996542 ~ 62996878 (+) True G532381
TU602885 lncRNA upstream 72614 62983938 ~ 62984188 (+) True G532374
TU602883 lncRNA upstream 74967 62981613 ~ 62981835 (+) True G532372
TU602881 lncRNA upstream 78315 62978271 ~ 62978487 (+) True G532370
TU602743 lncRNA upstream 91110 62963699 ~ 62965692 (+) True LOC110526308
TU602725 lncRNA downstream 10404 63079395 ~ 63198734 (+) False G532237
TU602735 lncRNA downstream 10404 63079395 ~ 63144230 (+) True G532237
TU602930 lncRNA downstream 28391 63097382 ~ 63151411 (+) True G532412
TU602744 lncRNA downstream 51797 63120788 ~ 63176699 (+) True LOC118965038
TU602948 lncRNA downstream 120111 63189102 ~ 63190085 (+) True G532430
XM_021607149.2 mRNA upstream 41265 63005672 ~ 63015537 (+) False LOC110526311
XM_036981769.1 mRNA upstream 90977 62948118 ~ 62965825 (+) False LOC110526308
XM_036980650.1 mRNA upstream 109610 62752706 ~ 62947192 (+) False LOC110526939
XM_036981770.1 mRNA downstream 50236 63119227 ~ 63120960 (+) False LOC118965038
XR_005052190.1 mRNA downstream 94861 63163852 ~ 63170077 (+) False LOC110526312
XM_036980657.1 mRNA downstream 94874 63163865 ~ 63175505 (+) True LOC110526312
XM_036981771.1 mRNA downstream 132411 63201402 ~ 63210821 (+) True LOC110526940
XM_021607163.2 mRNA downstream 173395 63242386 ~ 63243598 (+) False mcee
TU602899 other upstream 41816 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 234186 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 904584 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1077275 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3284718 59771708 ~ 59772084 (+) True G528653
TU603025 other downstream 239542 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 269245 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1700156 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1721331 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 2044289 65113280 ~ 65117956 (+) True G534653

Expression Profile