RNA id: XR_005052190.1


Basic Information

Item Value
RNA id XR_005052190.1
length 1263
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110526312
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63163852 ~ 63175505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaattaaaaataataaagccATCAAATAAAAACTAAGTAATATACACAAGTGAAATATTGTAATATTTCATAGTAATCTCCTATTTTTCTATTGATGTCTACCAAATGTGGACCTGACAGAAAAAAATGTGAATGTTCACTGTTGTTGGCTTCAGAATTTCCATGAAAAAGCTCTAAAATCATTTGAATGCCATTATTTCATCATGCATTTAATGTTAAAAAAATTATCGTaaacaaaatttaaaaaaatagaaaattgTGAACCGAAACCGAATCCGAATCGACCTCAAAAAACACTTATCGCTCAGCACtagttccacgtagaaccctctgtggaaatggttctacatggaacccgaaAAGTTTCTATCAGGAACCAAAAGGGTTTTACTTAGAACCAAAAAGGTTTAGTCAAatggttctcttatggggacagatAGCACCTTTTTATATGAGTGTAGAGAGTGCACAAGACATAAGGCATATAAGTCGCTTGGAGTGGTGAGAGACAGAAGGGGGAGGGGATGTGGGGgaaagagactgggagagagaagcTGCTGTGTGTGGACTGTGGCTTGCAGCTGCAATTGTGGAAGAGCGAGAAAGCGTGCTCAtgtgagagagactcagagactaccagagagagagagagagagagagagagagaaagcaaaagagggtgagagagagacagacagagatagagaaggCTGAAACACAGAGAGTGAAGTAAATAAAGAATGCAAGAAAGACTGTACAGTGACGCAGTGCTTCTCTGTCTACTTTAGGTGTACGAATTCTGTAGAGGCAGTGTGATACAAGGACTATACATTTCCTGTCTCCTATCAGCCGGATTTACTCCGAAAAGGACATCAATGACCATTGGACCATATACTTCTCCACAATATTGCAGGCACTAAAGGTGGACTTTTAGTGCAGTGACAATGCAGTGGCGTGGTCGGCCTTGAACTTCCATGGCTTCAATGAGAGGTGGCAGtctgtcacgtctactcctgctcctcccctctggtGTTCGACGTCGCCAGTATACTAACCACTGGTCCTGGgatccatcattacgcacacctggcatcaATCATTACAAGCACCTGCACGTTGACATGAGGCACACTTGGACTCAATTACCTTACTTATTACCAGCCCTatatctggcactcccttaggttcCTTCCCCAGTCAGTATTGATCCTGTGTTCATGCAAAGACGCTACTGTTATTTTGTCTCGTTTGATGTATTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602930 lncRNA upstream 12441 63097382 ~ 63151411 (+) True G532412
TU602735 lncRNA upstream 19622 63079395 ~ 63144230 (+) True G532237
TU602912 lncRNA upstream 64687 63049950 ~ 63099165 (+) True G532399
TU602730 lncRNA upstream 73362 63032931 ~ 63090490 (+) False G532237
TU602731 lncRNA upstream 73362 63032931 ~ 63090490 (+) False G532237
TU602948 lncRNA downstream 19025 63189102 ~ 63190085 (+) True G532430
TU602749 lncRNA downstream 49385 63219462 ~ 63228632 (+) True G532248
TU602752 lncRNA downstream 51094 63221171 ~ 63225329 (+) True G532251
TU602740 lncRNA downstream 51941 63222018 ~ 63226987 (+) True G532240
TU602974 lncRNA downstream 69927 63240004 ~ 63240389 (+) True G532447
XM_036981770.1 mRNA upstream 42892 63119227 ~ 63120960 (+) False LOC118965038
XM_021607149.2 mRNA upstream 148315 63005672 ~ 63015537 (+) False LOC110526311
XM_036981769.1 mRNA upstream 198027 62948118 ~ 62965825 (+) False LOC110526308
XM_036980650.1 mRNA upstream 216660 62752706 ~ 62947192 (+) False LOC110526939
XM_036981771.1 mRNA downstream 31325 63201402 ~ 63210821 (+) True LOC110526940
XM_021607163.2 mRNA downstream 72309 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA downstream 72322 63242399 ~ 63243598 (+) False mcee
XM_021607165.2 mRNA downstream 72366 63242443 ~ 63243598 (+) False mcee
XM_021607164.2 mRNA downstream 72593 63242670 ~ 63243598 (+) True mcee
TU602899 other upstream 148866 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 341236 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 1011634 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1184325 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3391768 59771708 ~ 59772084 (+) True G528653
TU603025 other downstream 138456 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 168159 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1599070 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1620245 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1943203 65113280 ~ 65117956 (+) True G534653

Expression Profile