RNA id: XM_036980657.1


Basic Information

Item Value
RNA id XM_036980657.1
length 2905
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110526312
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63163852 ~ 63175505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaagccATCAAATAAAAACTAAGTAATATACACAAGTGAAATATTGTAATATTTCATAGTAATCTCCTATTTTTCTATTGATGTCTACCAAATGTGGACCTGACAGAAAAAAATGTGAATGTTCACTGTTGTTGGCTTCAGAATTTCCATGAAAAAGCTCTAAAATCATTTGAATGCCATTATTTCATCATGCATTTAATGTTAAAAAAATTATCGTaaacaaaatttaaaaaaatagaaaattgTGAACCGAAACCGAATCCGAATCGACCTCAAAAAACACTTATCGCTCAGCACtagttccacgtagaaccctctgtggaaatggttctacatggaacccgaaAAGTTTCTATCAGGAACCAAAAGGGTTTTACTTAGAACCAAAAAGGTTTAGTCAAatggttctcttatggggacagatAGCACCTTTTTATATGAGTGTAGAGAGTGCACAAGACATAAGGCATATAAGTCGCTTGGAGTGGTGAGAGACAGAAGGGGGAGGGGATGTGGGGgaaagagactgggagagagaagcTGCTGTGTGTGGACTGTGGCTTGCAGCTGCAATTGTGGAAGAGCGAGAAAGCGTGCTCAtgtgagagagactcagagactaccagagagagagagagagagagagagagagaaagcaaaagaggGTGTACGAATTCTGTAGAGGCAGTGTGATACAAGGACTATACATTTCCTGTCTCCTATCAGCCGGATTTACTCCGAAAAGGACATCAATGACCATTGGACCATATACTTCTCCACAATATTGCAGGCACTAAAGGTGGACTTTTAGTGCAGTGACAATGCAGGAGCATCTCTCAGTCCAGCACATGGGCACCAGGAGCACACATTTCTCCTAGTAGTGAGGTTTGTCCTGGGCCTCGTCCGGACTACCATGACTGACCTCCTGGCCAACCTGAGTGTTCCATGGGGCACACAGGCGATTGTGTGCCCCAACCTGACAGCAGCAGCCCTGGTTGTGCCGGGGTCAGGCAAGTCTCTGGCCCCCTTCTGCACCTTCTGCTGCTGTGGCCTGCTGAACCGTACCCTGGCCGTGGTGTTTATGGTCAGTCTGGCCTTCGCCATAGTGGTGGGCAACGTGGTCACGCTCACCGTCTTCATGCAGACAAGACAGGTCCGTACACCACAGGGATACCTCaaagTCTCTCTGGCCATAGCGGACATGATGGTTGGAGTGCTGGTGGTTCCTTTCTCTGTCTACACTGAGATCTCTCTGATGGTGACCAGCTCCTCTCCTGTCTGGTACCAGGGGGGCACTGACCCCTCCATGGGGGGCCTGGTGGGACCCTGGCAGCCCTGCATGCTGATTGGTCCAGTCTTCGCTGGCTGTACGTTTGTCTCCATCAGTACTATTTTCCTGATGACGGTAGAGCGCTGTGTGGCCATCTTATGGCCCCTACATAAGGACCACCTGGTGACACGGAGACGCACCCTGtttctcatcctcttctcctgggCAGGCAGTTACCTTCTGGCCCTAGCCCCCCTCATCCTCAGCAACAACTTCACACTGGAGTACAGTGAGTGCAGCCGGATGTGTAACTATGTCCCCCTGTGGGATGGAGTCACTCTGCCCTCTGACGCCAACATCCTCCTACTGTTCCCCGTGTTTGACTTTACGCTGCTGGGCGGCACCCTGGTATTCAACATCCTGTCCTTCACCAGCATCCGCCGCTACACACGCAAACGTAAGCTCATGTCAGAGGGGAATGTGGGGGTCGAGGGAGGGGGAGGCGGCTGCCAACATAGACCCTCCTTCTCTGACATCAAGGCCGCCAAGACGATCAGCATTCTGACGTTTGCCTTCACGGCTTCCTTCACCCCCATCGCTGTGTTTGTGCTGGGCAACGTGGTGGGCTTCACCTGGTGCAACTTCTCCTTTGTAGCCTTCTGGATcctgactgggaacagctgctgTAATGTGATAATATACAGCGTGAGAGACCAGCGCTTCAGGAAAGGAGTGACTCTGCTTTTTCAGAGGGAGCATTCACCTACCCACGGGGAGAAAGGCGGAGCTACCCCCCCCACTCACCTTGTGACTACAACCCCACCTCCTTAAACTATTTTGAAAAGACAACCAGTGCCCTTTTCTTTAACTTTACTATGGAGAGAGGGATTTAATCAGCATTTAACTTCAGGTAAAAAAAATTCACTGTGTCTAAATAATGAAAGATAACTGTAGCTACCCTATGTGGGATCTAGTAGTTGCCAGCTATTCCCAGCATCATTTAAATCATATGACTCAAGCCGTCTCATTGGACTAGGTGAGATATCTGTGGGGGATATCTTAATAACATGCACTTTATCATAAGTCATAAGTAAGTAATGCATGGTTTTCATTTGTTTTGTGACCGTCCAGAAACATGTTAATTTTGCACAATTTTCTCTATAATAGCTTTTATTTTTGCTACAATACCACACTATATTCATGAGGATGGCGTAATCAAATGTGAGTGAATGAATTGTACGAATGTTTTGAATCTAAATGAAGAGAGATGTTGATGTTTTGTACAGTTATGGGCCATTCGACGGGTCTGTCATCTGTACTACACAGTAATGCATAATTATGGTTAGGAATATCATTCTCTTCAAGGTGATGTATCCTAAATAGGTACAGAAAGGTTTACATATGCAAGATCTTCTTTTGCATATTTGGATATTATTCTGCACACGGGCTATTAGTTTAATGAGCtctgcccccaaacaagaccaaattaaatctgaaccaatcatagatgtcttTGTTTCACAAGTTTAGACAtcaaagtacagcacagtacaattcagcacagtagagtacaatacagcacagtagagtacagttcagcacagtagagtacaatacagcacagtagagtaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602930 lncRNA upstream 12454 63097382 ~ 63151411 (+) True G532412
TU602735 lncRNA upstream 19635 63079395 ~ 63144230 (+) True G532237
TU602912 lncRNA upstream 64700 63049950 ~ 63099165 (+) True G532399
TU602730 lncRNA upstream 73375 63032931 ~ 63090490 (+) False G532237
TU602731 lncRNA upstream 73375 63032931 ~ 63090490 (+) False G532237
TU602948 lncRNA downstream 13597 63189102 ~ 63190085 (+) True G532430
TU602749 lncRNA downstream 43957 63219462 ~ 63228632 (+) True G532248
TU602752 lncRNA downstream 45666 63221171 ~ 63225329 (+) True G532251
TU602740 lncRNA downstream 46513 63222018 ~ 63226987 (+) True G532240
TU602974 lncRNA downstream 64499 63240004 ~ 63240389 (+) True G532447
XM_036981770.1 mRNA upstream 42905 63119227 ~ 63120960 (+) False LOC118965038
XM_021607149.2 mRNA upstream 148328 63005672 ~ 63015537 (+) False LOC110526311
XM_036981769.1 mRNA upstream 198040 62948118 ~ 62965825 (+) False LOC110526308
XM_036980651.1 mRNA upstream 216673 62752706 ~ 62947192 (+) False LOC110526939
XM_036981771.1 mRNA downstream 25897 63201402 ~ 63210821 (+) True LOC110526940
XM_021607163.2 mRNA downstream 66881 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA downstream 66894 63242399 ~ 63243598 (+) False mcee
XM_021607165.2 mRNA downstream 66938 63242443 ~ 63243598 (+) False mcee
XM_021607164.2 mRNA downstream 67165 63242670 ~ 63243598 (+) True mcee
TU602899 other upstream 148879 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 341249 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 1011647 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1184338 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3391781 59771708 ~ 59772084 (+) True G528653
TU603025 other downstream 133028 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 162731 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1593642 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1614817 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1937775 65113280 ~ 65117956 (+) True G534653

Expression Profile