RNA id: XM_036981771.1


Basic Information

Item Value
RNA id XM_036981771.1
length 3815
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC110526940
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63201402 ~ 63210821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGGAGTCTGTCAAGCATGGAGAATCAGGTGACCAACATCAACATGCTCCTCAAGGAGGCTCAGATGGAACTGGAAAGAATGGAAAAGGCTATAGGAGAGCCTACAGACACCAATGGGAAAAAGTACCTTGAGCTTCTACTACAGGGAGCCCAGATGCTGTTTCCAAGTAATTTGAAATTAGACAACACGACTGCTAGCAATATCATCAGCTGCGCTGGGGGAGTCATACTCCTCAAAATGAAAAGATGTGGGGCGGACAGTGACACTAATGTGGACACGGAAATGTTTGATTTGGCCTTTGAGATTTATAAGGCAGTAAGCTTGGTGGTGACCACAGAATCTAATGAGCCCTTCTTCGTGAAGCACCCAACAGGCAGCATCTACCAGATCAGCCTCACCCCATCACAAATGGATAACAATGTTCTAGGGTCAGAGGACGATGCATACATCAAGCTTCCACCTTTCTCTGCATTGCATTCCTCGCTGGAAAACCACTCACTTGTTAATGTACAGGTGACCACTTTTATAGGCAACCCATATTCATCGTCTGAAAACATCACAGGAACGGTGTGTACCCTTGTACTAAGGGATGGATTGACGGAAATCAGTGTAGAAAACTTGACAGAGCTAATTGAGATCATTCTTCCACGCCCAGATGCTCCTGTGCTCTCTGGCACGACTGTATCCTTGGAGGAAGGGGCTCGCGTTGGGACCACTTTCAACACTACGGACCCCAACATCACAGTCATATTCACCATACAGCCCAGTGTCAATGTGTCCCTAAAACTGCTGCTGGGCCTGGGCTCCCCACCCAATGACACCCACTATAAACACCGCACCGTCCTGAGACACACAGAGGGTTATCGCTGGCTGGTCACCCCTGAGATGATGGAAAAGGGAACAGGCACCTGGTATGTGAATGCCAGTCTGTTTAACTCAACCTGGAGCAAGGGACTGACACTACAGATCACCACCTTCACTACTAAGTGCATGTACTGGAACACTAAACAGCTGACATGGAGCATAGCTGGCTGCTGGGTGGGTATACAGTCAACTCCCAGGATGACACATTGTCTGTGTAACCACCTGACATCGTTTGGGAGCTCTATCTTTGTGATGCCCAACTACGTAGACGTGTCGCTCACAGCTCAGTACTTTGCCACAGTGAATGAGAACTATGTGGTGGTGGCGTTGCTCTCTGCCTTTTTTGGCCTGTACCTGGTCACTCTGCTCTGGGCCTGCTATGCAGACAGGAGGGCCCTCACCAGGAGGAAGATGACACTCCTGAAGGATAACCACCCATGTGCCAGTTATAACTACCTACTGAATGTCCAGACTGGCAGTCGGAGAGGGGCGGGTACCTCTGCCAATgtTACAGTCAAGTTGTTGGGTACACAGGGGGAGAGTGAGCCCCACCACCTAAGTGACCCTGATAAACCAGTATTTGAGAGAAGGGGTGTGGACTTGTTCCTGGTGACCACACCCTTTCCCCTGGGGGAGCTGACAGGCATCCAGCTGTGCCATGACAACTCTGGGGGGCACCCCTCCTGGTATCTCAACAAGGTGACGATCCAAGACCTGCAGAGAAAGAAGGTTTGGCACTTCCTGTCCTCATCGTGGCTGAGCTCTGACAGGGGGGACGGGCTGACCAAGAAGACCCTCAACGCTGCCAAGAAAAACGAGATCAGAAGCTTTAGAAATATTTTCCAGACCAGGACGTCGACAGGCTTTAGAGATCAGCACATCTGGGTGTCCATCGTAGACCCTCCCTGGCGTAGCCCGTTCACCCGAGCACAGAGGGTGTCCTGCTGCATGAGCCTCCTGCTCTGCACCATGGCAATCAACATCGCCTTCTGGAAGATCCCCAAAAACCAGCAGTCTCCTGTCATCTTCACCATTGGTTCGCTGGAGGTCACTTGGGAGGAGATCATGGTGGGGGTGGAAAGCGGTTTGCTCATGTTCCCCATCAACATCCTCATCATCACCATATTCCGTAGTATCAAGCCACGATTCGTCCAACCGAAGGAGAAGAACCCCGATATGCAGGGCCTGAAACCCCTCGCTGTTACCATGCCAACCATTCTTAAGgacacagaggagatggtgAATCTGCTCTGTAAGAGCCAGAGGAACAAAGTGCCTGAGCTAGAGAAGAAGCTGGAGTCATGCGATGACCTTTGCTCAGCCTTGGGCAGAGTGCAAGGGGTCATTCAGCTTATGCAAGGGTTGAGTGAGAGTGAGCCACACTGGGTCTACTGCAGCAAGTTTGTCCTGTACTTCCTCCACCACCTGTCCATGTGCCTGGAGCGGCTGGATGAGAGTGCCTTCCCCACCCCAGAGGCCCGTCAACACATCCTGAACACCGTCCACCTGCAGCAGAAGACGTCCGAGATGGTTTTCACCAGCCACATGGCTTACAGTCCTCCCCGTGTTGCTAGGGAGAAAAGGAAAAGCTCGAGCTGCTGGCTGCCCTGGTGGTTTGTGTTTGTGGGCTGGTTCTTGCTCGTCTCCATCAGTGTTGTGTCCACGTACTTTACCCTGATGTATGGCTTTGCCTATGGGAGGGAGAAGTCCATCCAGTGGGTTATCTCTCTGGCCATGTCCCTCTTCCAGAGCATCTTCATCCTCCAGCCTCTTAAGGTGATTGGTATGGCGATCTTCTTTGCCCTCCTCCTCAAACCAGTGGCAGTAGAAGACAGTGAGGAGGTTGGACTACTCCTGAAAGAACAACAGGAGATGTGTAAATTGTACTCTGGTAGGGAGATGCACTGAAGAAACACAATTTAGCTCTACACGCTGTCTCCAGAGGATCGATGGGTTTGGAAGACCTGATGCCCTACAACAGACATCCTCTGCTCTGCTGCACTGACTATCAACGTGGCAAACTGAGAATATAAGTTATTAGAAAATATAGTTGTTAGGTTTTTATTGAATACTTGTTACTCTTAATAAGAAAGGTACAAGGCATAATATGTATGAATGTACTGAAAACTACTGTATCATTGAAATTGCAATATTTAGTAATAAGCTGATAGTTAGAAACTTTTATTCTTGTGGATTGTATGAAGTTACTCAATGTATGGAATTACTCTgttatatttattttatcacaaaCCGCTGATATATTATTTTACACTGTACATTTATATTTACTTTTAAGTAACATACAGTCATCTCCAAAATCATtgtcacccttgataaagatgagcaaaaaagactgtataaaataaatactaGAAAACCAGAGCTATATTGAATGTTTTCTGAGATTAAATAACACATTGGGAATGATCTTAgaccactcctccatacagaatctttccagatcctttaTATCCTTCGTCTGTACTTATGGGCAGCCCTCTTCAGtacaaaccacaggttttcaatgggtttcaagtccggagacagagatggccattgcaaaatgtagatttttttttgttgtcaattaATAATATCTTTGTGGATTTTAtctgtgcttggggtcattgtctagctggaagatccacttgtagccaagtttcagcctcttGGTAGGGGCAACCAGGTTttgggctaaaatgtcctggtacttggtacAGTTCATGGTACCGTTCAATGTCACTATCACCAGGAAGCAAAACCGCCCCATAaaatcaaagatccaccaccatattttacagtaggcatggggttattttctgcatTTGCATCTCTCTTACAAAAGAAAGATGCATATGGTcttggctcctgagtggcgcagcggtctaaggcactgaatctcagtgcttgaggtgtcactacagacaccctggtttgaatccaggctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602727 lncRNA upstream 2668 63032931 ~ 63198734 (+) False G532237
TU602725 lncRNA upstream 2668 63079395 ~ 63198734 (+) False G532237
TU602948 lncRNA upstream 11317 63189102 ~ 63190085 (+) True G532430
TU602744 lncRNA upstream 24703 63120788 ~ 63176699 (+) True LOC118965038
TU602930 lncRNA upstream 49991 63097382 ~ 63151411 (+) True G532412
TU602749 lncRNA downstream 8641 63219462 ~ 63228632 (+) True G532248
TU602752 lncRNA downstream 10350 63221171 ~ 63225329 (+) True G532251
TU602740 lncRNA downstream 11197 63222018 ~ 63226987 (+) True G532240
TU602974 lncRNA downstream 29183 63240004 ~ 63240389 (+) True G532447
TU602975 lncRNA downstream 30360 63241181 ~ 63241419 (+) True G532448
XM_036980657.1 mRNA upstream 25897 63163865 ~ 63175505 (+) True LOC110526312
XR_005052190.1 mRNA upstream 31325 63163852 ~ 63170077 (+) False LOC110526312
XM_036981770.1 mRNA upstream 80442 63119227 ~ 63120960 (+) False LOC118965038
XM_021607149.2 mRNA upstream 185865 63005672 ~ 63015537 (+) False LOC110526311
XM_036981769.1 mRNA upstream 235577 62948118 ~ 62965825 (+) False LOC110526308
XM_021607163.2 mRNA downstream 31565 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA downstream 31578 63242399 ~ 63243598 (+) False mcee
XM_021607165.2 mRNA downstream 31622 63242443 ~ 63243598 (+) False mcee
XM_021607164.2 mRNA downstream 31849 63242670 ~ 63243598 (+) True mcee
XM_021607169.2 mRNA downstream 39771 63250592 ~ 63323571 (+) False apba2b
TU602734 other upstream 2668 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 186416 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 378786 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 1049184 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1221875 61971736 ~ 61979527 (+) True LOC110526282
TU603025 other downstream 97712 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 127415 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1558326 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1579501 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1902459 65113280 ~ 65117956 (+) True G534653

Expression Profile