RNA id: XM_021607165.2



Basic Information


Item Value
RNA id XM_021607165.2
length 566
RNA type mRNA
GC content 0.48
exon number 3
gene id mcee
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63242386 ~ 63243598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTGCTATAAAGATCCGGATAGCAGttacAGGTCTCTCAAAGTGTGTTCGTCACACTTGTTCTCCAATGCTGAGGGCAATTTCAAACTCAACACCACTCTGCCAAGGTATTCCAGGATCTGTATGGAAACTGGGAAGGCTAAATCACATCGCTATAGCTGTGCCAGACATGGAGAAAGCCACTGCTCTTTACAGAGATGTACTGGGGGCTCAGGTCAGCGATAAAGTTCCCCTTCCTGAGCATGGAGTCTACACTGTCTTTGTGGAGCTGGGTAACACAAAGCTGGAACTGCTGCACCCACTCGGGGAGAAGAGCCCCATTGCAGGCTTCCTACAGAAGAACAAATCTGGTGGGATGCACCATATCTGCATTGAGGTTGATGATATCAATGCAGCGATAGTGGATCTGAAGGCTAGGAACATTAGAACCCTGTCAGCTAAACCACGGATAGGCGCTCATGGGAAACCTGTCATGTTCCTCCACCCAAAAGACTGTGATGGTGTACTTGTGGAACTGGAGCAAACTTGAATACCCACAGGTCTCATAAACTCTGTAGTTCACAATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU602976 lncRNA upstream 509 63241607 ~ 63241934 (+) True G532449
TU602975 lncRNA upstream 1024 63241181 ~ 63241419 (+) True G532448
TU602974 lncRNA upstream 2054 63240004 ~ 63240389 (+) True G532447
TU602740 lncRNA upstream 15456 63222018 ~ 63226987 (+) True G532240
TU602752 lncRNA upstream 17114 63221171 ~ 63225329 (+) True G532251
TU602924 lncRNA downstream 1272 63244870 ~ 63245239 (+) True G532407
TU602918 lncRNA downstream 1858 63245456 ~ 63246613 (+) False G532403
TU602917 lncRNA downstream 1896 63245494 ~ 63246613 (+) False G532403
TU602919 lncRNA downstream 1896 63245494 ~ 63246971 (+) True G532403
TU602927 lncRNA downstream 3671 63247269 ~ 63247888 (+) True G532410
XM_036981771.1 mRNA upstream 31622 63201402 ~ 63210821 (+) True LOC110526940
XM_036980657.1 mRNA upstream 66938 63163865 ~ 63175505 (+) True LOC110526312
XR_005052190.1 mRNA upstream 72366 63163852 ~ 63170077 (+) False LOC110526312
XM_036981770.1 mRNA upstream 121483 63119227 ~ 63120960 (+) False LOC118965038
XM_021607149.2 mRNA upstream 226906 63005672 ~ 63015537 (+) False LOC110526311
XM_021607169.2 mRNA downstream 6994 63250592 ~ 63323571 (+) False apba2b
XM_036980661.1 mRNA downstream 6996 63250594 ~ 63323571 (+) False apba2b
XM_021607170.2 mRNA downstream 52155 63295753 ~ 63323571 (+) True apba2b
XM_036980662.1 mRNA downstream 94931 63338529 ~ 63527846 (+) False LOC100750227
XM_036980663.1 mRNA downstream 94931 63338529 ~ 63527846 (+) False LOC100750227
TU602734 other upstream 43709 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 227457 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 419827 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 1090225 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1262916 61971736 ~ 61979527 (+) True LOC110526282
TU603025 other downstream 64935 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 94638 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1525549 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1546724 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1869682 65113280 ~ 65117956 (+) True G534653

Expression Profile