RNA id: XM_036980661.1


Basic Information

Item Value
RNA id XM_036980661.1
length 3539
RNA type mRNA
GC content 0.54
exon number 12
gene id apba2b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63250592 ~ 63323571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTAACGACCGGAGAAACACAAGTGTTTCACAAACTCTGTGGGAAACCCAATGGGGAGAACTGCAGTGGGGTCTTTATACACGTTCCGGGGCCGCTTCAACTGGTACTTCTATTTTTCAGATTCCGGGGCTGGTCGCTTTCTCTCGATGTAATCTGATCCCGTGCAAGTGTCTTGGAAGCATCATCAGCTTTCACAATTCTGAAAGGGAGGTGACTTGAGCGACCGAAGAACTAACGTTGAATTCAGCAGGACTGAGGACCATTTGAGATGCATGGCCTGTAAGCAGCCAGCGCCAGCGATGGCTCATAGGAAGAGGCCAGGGACCAGCGGCTCCAGCTGCAGCATGTTGGAGCCTCCCGTCCGGCCCCCCTGCCCCGCCGCCTACCCCCCAGAGCAGCACGACCAGGAGCAGGAGGAGGGgccgggggaggaggaggaggtccactACTGCCGCCAGCAGGGCCTGGAGCCAGAGCTGACGGACAGCCGGCCGGACACACCTACTACACCAGAGCCGCAACACGAGCATGAACACAGCCATGACCACGATCACCCAGACTGCCACGGCCATGATGACCACAGTCACAGCGACGACCATGCAGAGTGCCATGGCCACGACCGCGAGCATGCAGGCTGTCACGATCACGGTCACAGTCACGACGATGTAGACTGCCACGACCACGGCCACGTCCACAGTCACATCAATGACCACGACCATGCAGGCTGCCACGGCCACCGTCACGACCACGCTGACAGCCTGGATGGAGACTCCAGCTCTGACTATGTGAACAACAGCTCAGAGGAGGAGGACTATGATGAAGGTCTGCCGGAGGAGGATGAGGGCATCACCTACTACATCCGCTACTGCCCTGAGGATGACAGCTACCTGGAGGGCAGCATAGACTGCAACGAGGGCGAGGCTGACTATACCGCCAGCACCGTGCAGCACGTCCCGGCTGAGCCCCCGGGCGACACAGACGAGTGCCAGGaagcggtggaggagtgggtggaGGGAGAAAGTGGGGTGGATGTGGGGGAGGTGCGCTGTGAGGTGGTGGAGCAGGACCCAGATGAACAGATCTACGACGTCCTGGACCACCACCCCCACCCCGCCGCCGTCCTGCATGAGTCCCCCCCAcccacagaggaagaggaggaggtgagagctgGGGTTGCTTACACTGGGGACTACTATGGCCCAGAGGAGGAAAATGGGAACTCCGTGGTTCACGAATCGCGGTCTCCATACCGTGGCCGTAAAGTGGTAGTggagggggagacgggggaggaggcggaggaggacaTTGACCAGATAGTGGCAGAGATCAAGATGAGTATGAGCATGGGTAGTCTGAGCAGCGGTGGTACTGACCAGAGTCCTGACGAGCTGGTGCAAGACAGTGTACCCAGTGATTACCACCCTCCTGAGGCCCACACCAAGCCTGAGTCTgccccctacaccccaaccccacACCGCCACGACAGCAGACCCAAGTCTCTCAACCTCCCCTCCTCCACACGGCACAACAACCCTGAGCTCCAGAGGGGCTTCAAGGTTCGCTCCCGCACCCCGGAGGAGCGACAGCAGTGGGCTCAAGAACAGATGACCAACGGTGCAGAGCATCCCAGGAAACAGCAGCGTTCTGACCTCAACGTGCCGCTGGAGAACAACAATGTCCCGGAGGAAACTAAGAAGGCTGCATCTTTCCCCAGCTTTGTTGATGttCCGGGGCCCTGTGAGCCAGAAGATCTTATTGATGGCATCATCTTTGCTGCTAACTACCTGGGCTCCACCCAGCTGCTCTCTGAGAGGAACCCGTCCAAGAACATCCGCATGATGCAGGCCCAGGAGGCTGTCAGCCGGGTCAAGAGTCCAGAGGGAGACGCACAGACACTGACAGAGGTGGACCTCTTCATCTCCACCCTGAGGATCAAAGTGCTCAACGCAGACACACAGGAAACTATGATGGACAACGCCCTGCGCACCATCTCCTACATAGCTGACATTGGGAACATCGTGGTGCTGATGGCGAGGCGCCGCATGCCGCGCACAGCCTCCCAGGACTGCATCGAGACCACACCTGGAGCCCCAGAGGCCAAGAAACAGTACCGGATGATCTGCCACGTCTTTGAGTCTGAGGACGCCCAGCTCATAGCCCAGTCGATTGGACAGTCATTTAGCGTGGCTTACCAGGAGTTCCTGAGGGCCAACGGCATCAACCCAGAGGACCTGAGTCAGAAGGAGTACAGTGACATCATCAACACGCAGGAGATGTACAACGATGACCTCATCCACTTCTCAAACTCTGAGAACTGCAAAGAGCTGCAGCTGGAGAAGCATAAGGGAGAGATCCTGGGCGTGGTCATAGTGGAGTCTGGCTGGGGCTCCATCCTGCCCACGGTCATCCTGGCCAACATGATGAACGGTGGGCCGGCCGCCCGATCCGGGAAGCTCAGCATCGGAGACCAGATCATGTCCATCAACAACACCAGCCTGGTGGGCCTGCCTCTCGCCACCTGTCAGGGAATCATCAAGGGCCTGAAGAACCAGGTGCAGGTGAAGCTGAACATTGTGAGCTGTCCCCCTGTCACCACCGTGCTCATCAAGAGACCAGACCTCAAGTACCAGCTGGGCTTCAGCGTCCAGAATGGGATTATCTGCAGCCTGATGCGGGGGGGTATTGCTGAGCGGGGGGGTGTCCGGGTTGGCCACCGCATTATTGAGATCAATGGCCAAAGCGTGGTGGCTACAGCGCATGAGAAGATTGTCCAAGCCCTCTCAAACTCTGTGGGCGAGATTCACATGAAGACAATGCCAGCGGCCATGTTCAGACTCTTAACAGGACAGGAGACTCCTATGTATATATAAACCAAGGACAGATCCCATTTTCCTCCACAGAGGAGCTGTAAGCAGTGGTTGTTTACAGTCCAGTTGGAGAGCTCTAGGTGGACAAGATTAGCAGACTAATGAGTGTCTGAGGATGGCTAGTGAGCCAGGGATTGTCTCTCTTACTGTTGTGTCGCTGACTTATCATTTTTTTCCTCCATCTTTTCTGAGCTAACATTCATTCAACTGACACTCACGATATTTTGCTGATGTTAATACTAAGGAGGGTCATCTGGGCAGAAGGTGTTTAcgttatttatttgtgttgttttttgttttttttgggaCGCCTCACAATGTATATTTTTATATTCATATCAATGTCATATTGTACCTGCATATTGTCTCATTTAGTTCTCTTTGCTCTATTTAATTTTCATGTAAATACATATTTTGCTAATGCGTCGGAAGTAATGGGGAAGGGTCATGGTTGCTTTGTAAATATTTATTGACTTTTCCTGCTGGTTTGATAGCAGGGAAGAGAGCCCTTGACCGCTAAAGGACGGTTGAAATCGTGCTCTCAATATAGTTTAGATGGACAATAAAAGGGAATTGGGGAGTGACTTGGGTAATATAAttttgtttatatacagtaccagtcaagattttggacacacctactcattcaagggtttttctttatttttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602926 lncRNA upstream 1150 63248026 ~ 63249444 (+) True G532409
TU602927 lncRNA upstream 2706 63247269 ~ 63247888 (+) True G532410
TU602919 lncRNA upstream 3623 63245494 ~ 63246971 (+) True G532403
TU602918 lncRNA upstream 3981 63245456 ~ 63246613 (+) False G532403
TU603070 lncRNA downstream 21616 63345187 ~ 63345468 (+) True G532506
TU603083 lncRNA downstream 38272 63361843 ~ 63362056 (+) True G532519
TU603052 lncRNA downstream 141504 63465075 ~ 63549030 (+) False LOC100750227
TU603058 lncRNA downstream 196594 63520165 ~ 63549030 (+) True LOC100750227
TU603187 lncRNA downstream 350406 63673977 ~ 63674925 (+) True LOC110526321
XM_021607163.2 mRNA upstream 6996 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA upstream 6996 63242399 ~ 63243598 (+) False mcee
XM_021607165.2 mRNA upstream 6996 63242443 ~ 63243598 (+) False mcee
XM_021607164.2 mRNA upstream 6996 63242670 ~ 63243598 (+) True mcee
XM_036981771.1 mRNA upstream 39773 63201402 ~ 63210821 (+) True LOC110526940
XM_036980662.1 mRNA downstream 14958 63338529 ~ 63527846 (+) False LOC100750227
XM_036980663.1 mRNA downstream 14958 63338529 ~ 63527846 (+) False LOC100750227
XM_036980664.1 mRNA downstream 14958 63338529 ~ 63527846 (+) False LOC100750227
XM_036980665.1 mRNA downstream 14958 63338529 ~ 63527846 (+) False LOC100750227
XM_036980666.1 mRNA downstream 14958 63338529 ~ 63527846 (+) False LOC100750227
TU602734 other upstream 51860 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 235608 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 427978 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 1098376 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1271067 61971736 ~ 61979527 (+) True LOC110526282
TU603064 other downstream 14665 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1445576 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1466751 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1789709 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 1832938 65156509 ~ 65161330 (+) True LOC110526356

Expression Profile