RNA id: XM_021604992.2


Basic Information

Item Value
RNA id XM_021604992.2
length 1108
RNA type mRNA
GC content 0.41
exon number 7
gene id terb2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63334916 ~ 63337941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGTCCATGCTGCGCTGCTCGCGCCCTCGAATGGCAACATCCGGAACGCGGCCGATCATTGACGTCATCCTCACCTTGACGATTTGTTCAACATAAAAGGTTTTCAGATCAACAAGGACAAACATTTTATaaacacaatatttttttttttttttaactgaaatCTTTGGACAGTCTTTGCAAAGTATGTTCACAAATAGAACAGCATGGTTCTCCAATAGTGTGAGAAGAGGAAGCCGTTGGTTTTGGGTATCTGAGGGTGGCGGTATTACAAGTTGGGAGACTGCAGACTACCTTTTCAGTGAGGATGCCACCTGTCCTGATACAGAAAGGATATTTGAGAGTGTGGACTATGCTGAGAACAGGCTAACAGTTTTTCACAGCTTCTATCTAGCTGCCTGTGAGAAATGCCACAGTGTCAAGTCAGTGTGCATCGGTCATTATGTGCTGCCTCCAGTCTCTGTCCAGGAGGTGGTGAAAGCAGTGGTTGGGAGATTCATTTGGGAGCAGGAGGATAGTGCAAAGGCTGTTGATACAGAGGATTCAGATGACAGACTGAAATTGGGCAATAGGCAGAAGGAAGAGGAATACAGTGGAGGTTGCTGTGATCACACAGACATCAATAGTTGCCATGCGGTAGCCTTTCTGGATATTCCGGATACTCCACAAAGAGAGGGTGCTCTGTGTTGTGAAGTACAACATTACCCAGTTAATAACATGGTTACAGGGTATGTCAGTATTGATGAACTGAGGACTTACTCAGGAGAACTTCAAGACTTCCTACCAGGCCATTGTGGTTCTTCAGTCTCTAAAAAAAGGCGCTCCACAGTAGATATTGCTTAATGTCATATTACAAGGATACAGATCACAGGGATAATTAAGAGTAACACTTTTTATTGGAGAAGAACAAATACACTATGGGATGTTAAATGGAAGATTTAGCAGGATCGCTAGACAGTGTTGTCCCTTTTTCACTATTCACCATTGTTTTAGTTGTtgaattataaaaaatatatatatatattttacctattGAATTAAAGAGTTTAcatacatatatttttatttacacAGACATGATGAGATATACAGTGTGTTATGAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU603545 lncRNA downstream 7736 63322834 ~ 63327180 (-) True G532932
TU603593 lncRNA downstream 25104 63309335 ~ 63309812 (-) True G532974
TU603589 lncRNA downstream 29947 63304086 ~ 63304969 (-) True G532970
TU603536 lncRNA downstream 85449 63249159 ~ 63249467 (-) True G532924
TU603535 lncRNA downstream 85912 63248302 ~ 63249004 (-) True G532923
TU603724 lncRNA upstream 150890 63488831 ~ 63489566 (-) True G533090
TU603722 lncRNA upstream 155750 63493691 ~ 63499934 (-) True G533089
TU603674 lncRNA upstream 164739 63502680 ~ 63527810 (-) True G533048
TU603684 lncRNA upstream 168774 63506715 ~ 63508283 (-) True G533055
TU603822 lncRNA upstream 326103 63664044 ~ 63664335 (-) True G533181
XM_021607171.2 mRNA downstream 4684 63325814 ~ 63330232 (-) True LOC110526320
LOC110526941 mRNA downstream 94263 63235956 ~ 63240653 (-) True LOC110526941
XM_036980659.1 mRNA downstream 99633 63224573 ~ 63235283 (-) True LOC110526314
XM_036980658.1 mRNA downstream 99691 63224573 ~ 63235225 (-) False LOC110526314
XM_036980660.1 mRNA downstream 99691 63224573 ~ 63235225 (-) False LOC110526314
XM_021607200.2 mRNA upstream 426719 63764660 ~ 63773065 (-) False cilp
XM_036980686.1 mRNA upstream 426719 63764660 ~ 63773065 (-) True cilp
XM_021607201.2 mRNA upstream 485946 63823887 ~ 63944930 (-) False igdcc3
XM_036980687.1 mRNA upstream 615092 63953033 ~ 64013404 (-) True igdcc4
XM_021607207.2 mRNA upstream 711504 64049445 ~ 64084887 (-) True LOC110526332
TU603463 other downstream 344638 62985529 ~ 62990278 (-) False LOC110526310
TU603357 other downstream 479909 62822905 ~ 62855007 (-) True G532766
TU603354 other downstream 482099 62851696 ~ 62852817 (-) True G532763
TU602531 other downstream 776517 62514123 ~ 62558399 (-) True LOC110526302
TU598719 other downstream 3637953 59528320 ~ 59696963 (-) False znf536
TU604146 other upstream 485958 63823899 ~ 63825525 (-) False igdcc3
TU604906 other upstream 1160512 64498453 ~ 64499614 (-) True G534201
TU605061 other upstream 1240857 64578798 ~ 64614796 (-) True G534349
TU605344 other upstream 1517554 64855495 ~ 64885532 (-) True G534603
TU606664 other upstream 2286048 65623989 ~ 65625972 (-) True LOC110526365

Expression Profile