RNA id: XM_021607172.2


Basic Information

Item Value
RNA id XM_021607172.2
length 7869
RNA type mRNA
GC content 0.53
exon number 32
gene id LOC100750227
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63338236 ~ 63549030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACACTCTCTCCTACCTCACACACGGACATTTGGGTGCCGCTGCAGCATTTTGCTagctagagttttttttcccaaaGAAAAGTGCCTCTAGGGCGAACAACAAAACAATGTTGTGGTCCTGACTAACATTGAATGGATAAGCCATCTATTCTTGAGCACTAATGAGATTAGGGTGTCATTGCAGACATGGGTTGCAGCGGCATGGTACCTTTTGTTGAGCTCCGTGGGGAGTGTTTTCCCTGTCAGTCCTTCAGCGCTGGAAATGGCGTTCTGATGCTGAACAAGGAAGACGCGGTGCAGGCGGATGCCAGCGAATAGAAATTACATGTTTTCCATAAACTGGTTTGTGGTGTGGATTCCTAGTAGTGGTGGACAACATGAAGTACCAGAAATACATAACGGTGATACAGATGGCTATGGGGGTGACTGCCATCAACAGAGACAATTGCATCCCTCCTAAGAGACAGATGTGGGTGACTCCCACAGATGGATTGTCAGGGATAGGTGCCACAGGGATAGGCACCGCTGCTTCGTCTGCTGCCATTACGGAAGCTCAGGATTCAGCAGAAGCAGCTGCAGAAGATGCTGCAGCTGCTCGTGCCGCTGCTCGTGCCGCTGCTCGTGCAGGTGCTATGTGTGGTTCTGGTGCTATAGGAGGATGCAGTGTAATGTTTGCCACCTCCACACTCTCACTGCCCATGACCCAGGGCAAGCCCTCCCTCCGCAGGATCAAGGGCCGAATTCACCGCAGCAAGAGCCTGGACAGCATAGACCTGCTCGACTCCAATaGCGCAGCGATGGAGGAAACTGTAATATGGGAACAGCACACAGTGACCCTTCACAGAGCCCCAGGGTTTGGGTTCGGCATAGCCATCTCAGGGGGCCGGGACAACCCTCACTTCCAGAGTGGTGAGACTTCCATTGTCATCTCCGACGTCCTGAAGGGAGGCCCAGCAGAAGGACTCTTATCGGAAAATGACCGTGTGGTAATGGTCAATGCGGTGTCCATGGATAACGTAGAGCATGCGTACGCAGTGCAGCAGCTTCGGAAGAGTGGAAAGAATGCAAAAATAACGATCAGAAGAAAACGGAAGGTTCAGATCCCGGTGTCCCGCCCGGGAGACAGGGAGACTATGTCCGAGCACGAGGAAGAGGACACGGATGAAGACGATGGTTGCGAGCCGCACAGCGGGCCCACCAGCGCCTACGGAGCAACGAGCGGCGGCACGGCCAGCAGGCGGACGAACGACCGCGAGCGTGAACGCAGCAACAGCAGCCGGCGGGAACACAGTGCCTCGCGAGAGAGGAGCATCTCGCCCCGCTCCGGCCGATCCCAAGGTTCCTCTACACCGTCTCGCCCCGCCAAAGTCACCCTTGTCAAGTCCCGCAAGAATGAAGtAGAGTATGGTCTGCGTTTGGCCAGCCACATCTTTGTGAAGGACATCTCCCCAGAGAGCCTAGCAGCACGGGACGGAAACATCCAGGAGGGAGACGTGGTGCTGAAGATTAACGGCACAGTGACCGAGAACCTGTCGCTAATAGATGCTAAGAAGCTGATCGAGAGGTCAAAGGGCAAGTTAAAGATGGTGGTGCAGAGAGACGACAGAGCCACGTTGCTCAACATCCCCGACATGGACGACAGCATTCCCTCCGGCAACAACTCCGACCGAGACGACATTTCAGAAATTCATTCACTGACCTCAGACCATTCCACTCGATCCCATGATCGAGCACGGGGCAGTCGATCCCGCTCCCCTACCCGGTCTGAGCCCTCGGACCCCTCCCGACACTCACCACGGCAGATTAGCAATGGCAGTTGGAGGCTAACGAACGCAGGGACATTCTTACACAGAATACTCCCACTCCACAGAAGTCGAGATGAGGAGAGGATTTCCAAGCCCGGGGTGATGTCGACTCCTGTTAAAGGTTCCCAGGAGGCCCTAATCCAGGCCATCAGCGACCAGCCACTGGCCAGAGAGGACAAACTGCCCCCACTGCCAGAACCAAAGCCAGTGTATGCCCAGCCTGGCCAGCCTGATGTTGACCTTCCAGTCAGCCCCTCTGATGCCCCAGTGCCCAGCGCTGGTCATGATGACAGCATCCTCAGGCCGAGTATGAAGCTGGTGAAGTTTAAGAAGGGGGAGAGTGTTGGCCTGAGGCTGGCCGGAGGGAACGACGTGGGCATCTTTGTAGCCGGAGTCCTGGAGGACAGCCCAGCTGCCAAGGAAGGTCTGGAGGAAGGAGACCAGATTCTCAGGgtAAACAACGTAGACTTTGCTAACATCATCCGAGAGGAGGCTGTGCTGTTCCTCCTAGACCTTCCCAGGGGTGAAGAGGTCACCATTCTGGCCCAGAAGAAGAAGGATGTTTACCGTCGGATAGTAGAGTCAGATGTGGGTGACTCGTTCTACATCCGGACCCACTTTGAGTATGAGAAGGAGTCTCCGTACGGCCTGAGCTTCAACAAGGGAGAGGTTTTCCGTGTAGTGGACACCCTCTACAACGGCAAGCTGGGCTCCTGGCTCGCCATACGCATTGGCAAGAACCaccaggaggtggagagaggcatCATCCCCAACAAGAACAGGGCAGAGCAGTTGTCCAGTGTGCAGTACACCCTCCCCAAAACGCCAGGGGGCGACAGGGCTGACTTCTGGAGGTTCCGTGGTCTGCGGACCTCCAAGAGGAACCTGAGGAAGAGCAGAGAGGACCTGTCTGCCCAGCCGGTCCAAACCAAGTTCCCTGCCTATGAGAGGGTGGTGCTGAGAGAGGCTGGTTTCCTGAGGCCTGTGGTGATCTTTGGGTCCATCGCAGACGTGGCGAGAGAGAAGCTGGCCAGAGAGGAGCCTGACCTGTTTGAGCTTGCCAAAACACAGCAACATGAAGGAGTGGAAAAGAGTGAGCCCAAAGACGCAGGAAAAGACCAGCGCAGCTCCGGGATCATTCGTCTCCACACCATTAAACAGATCATTGACCGGGACCGGCATGCTGTGCTGGACATCACCCCCAACGCTGTGGACCGTCTGAACTACGCCCAGTGGTACCCCATCGTGGTGTTCCTCAACCCAGACAGCAAGCAGGGCGTCAAGACCATGAGAACCAGGCTGTGCCCCGAGTCCAGGAAGTCAGCCAGGAAACTCTACGAGAGAGCCCTCAAACTGAGGAAGAACAACCACCACCTCTTCACCACCACCATTAACATGAATAATATGAATGACGGGTGGTACGGTGCCCTGAAGGAGACCATTCAACAGCAGCAGAACCAGCTGGTGTGGGTTTCAGAGGGAAAGGCGGATGGTGCTCCAGATGATGACCTGGATCTGCATGATGACCGTCTGTCGTACCTGTCGGCTCCGGGCAGTGAGTACTCCATGTACAGCACGGACAGCCGCCACACCTCCGACTACGAGGACACGGACACAGAGGGCGGGGCCTACACCGACCAGGAACTAGACGAGACGCTGAACGACGAGGTGGGCCTGCCCACTGAGCCCGCTATCACCCGCTCCTCTGAGCCCGTCCGAGAGGACCCGCCAGTAATCCAGGAGCCCCTGGGGTACGGCGGGTACCAGCACACAGTGCAGCCCGACCCCCTGAACCGGATCGACCCAGCTGGATTCAAGGCACCAGCGGCCCAGCAGAATGAGAAAGCAGAGGCTGTTCCGGCCACCATGCCTATCCTCCCTCAGCAGCCTGTGTTACTGGCTGAGACAGAGGCAGTGCCCCCTGCTGTCGACAACACCGTAAATGGTGTAGCTGGTTTGAGCCATGGTTTAAGCCTCGGCCCTATCGCTGCTACCCAGAGCGAACCCAGCCCAGGCCCCGGCCCCGAGGCTGACTGGCTTAGGATGCCCACCCCTGATCTAGCTCAGCCCCTGGCCCCGGCCCCAACGCTTGAACCCGAACCCCTACAATCCGGACCGCCCAGTTCAGAACCACAGATGTACAAGAAGGATCCCTACCTGGAGGAGCCAATcagagtgaaacatggtggtgtaAAGCCGTCTCCGGCGATGGGGCCTCCCATGACCTACGAGTCCCAGCCTCCGTACCAGGACCAACACCCGTACAGAGATTACGATCACCCTCCTAACCGCTACGACGGGGGTGGCTACCTCGAACCAAAGTATCTTAACTTCGACTCTCAACTGCACCACGAGAAAAGTGTGCCTCACTACGATGACCAGTGGCCTCCTTACAACCAGCAGACCTCTGGCCCACCACCCCACCAGCAACAGCAACCTCCTGGGCATGGCTACGACCCCCGGCTGTCCTACGAAGACGGACCCAAGCAAGACTACAGCCCTCCTCAGCTGCGCTATGATGAGGCCCCGCTGGGCTACAACGGACGACCTCGCTACGGAAAGCCTGCAGGACCAGGACCCATCCGCTACGATGAGTCTCCTCCATCCGGCCCAGGGGGCTACGCTCCTCTACGTTACGACCAGGAGCCTCACCCGTATCCCCCTGCAACACGCTCTCCAGAGCCCCCTAAACAGTACTACCAGGGGGAGCCTGCCCAGCGGCCAGGACCTGGGCCGGCCTACAACCAGGCACCACCTCAGCACCGAGGCTACAAGCTCCCGCCCCAACAGTACGAACCCATCATGAACTTTGACGCCCCCGTGCCCGCCCCCAAACCACAACCAGAGGCTCTCCGTCCCTCACCTGGGGACACGGTGATCACTACAGCCCCCaatctccttccccctccccccagaGTGGAGCCGGAGGACGACCCGGCCATAAGGGCCCAGTCGGTGCTGTCCAGGGTCAAGATGTTTGAGAACAAGCGCTCTGTGTCTGTGGACCGAGCCAAGGAGGCAGGGGACACCTTCGGGCTCAGGTCAGCAGATCTGCCCACCAAACCAGGTGCGTGCATTCCTAAAGCCAACTCGCTCAGCAATCTGGACCAGGAGAAGTCGTTCAGagTCCCTGAGCCTCAGAAGGTCCGGGAGGTGTCCGATGATGACATAgtgcgctctaaccactatgacCCAGATGAAGACGAGGAGTACTACAGGAAACAGCTGTCCTACTTTGACCGGCGCAGCTTGGACGCAGGCAAGGCACCTCCTCAGACAACACCTGTCATCGCAACCAAACCTGCTGCTCAACCACAAGCACATCCCGGATACAACTACCCAAGggcaGAGTCAGTGGAGAAGGTCAGTCCTGTGGAGAGGAGATATGAACCCGTTCCCCAGGTTACCCCCGCTGCCCCACCTGCCGTACTACCCAAACCCACCTCATCTGAGGCAGACACAGTCACGACCAACTACCTGCCCCAGAAGAGTTACCCTGAGAAGTCTCCTGTGAACGGTATGGCAATGAAGGACCAGCCCAAGGCCCCGGCCAATACTAGCTACAACCGCTACGTCCCCAAGCCCTACACCAACTCCGCCAAGCCCTTCGAGAGGAAGTTTGACAGCCCCAAGTTCAACCACAACCTGCTGCCCAACAACAAAACAGACCTGACCCCAGCCATCAAGGCCCCAGCCAACAGCACAGCCCCAGCCAAGCCCCAGATCTCCCCCCAGCCTACAGACCTGGACTCTGGCATGGACACCTTCACACGCACCATGGACAACAGGTCCAAGTACCAGcacaacaacatcaatgctgtGCCCAAGGCCATCCCTGTCAGCCCCAGTGCtctggaggatgatgatgaggatgaaggtCACACGGTGGTGGCCACGGCCCGGGGGGTCTTCAACTGTAATGGAGGGGTGCTGAGCTCCATCGAGACTGGTGTCAGCATCATCATCCCACAGGGGGCCATCCCCGAGGGCGTAGAACAGGAGATCTACTTCAAAGTCTGCCGGGACAACAGCATCCTGCCCCCCCTGGACAAGGAGAAAGGAGAGACCCTGCTCAGCCCGCTGGTGATGTGTGGCCCTCACGGCCTCAAGTTCCTGAAGCCTGTGGAGCTGCGTTTACCTCACTGTGCGTCTATGACCCCAGATGGTTGGTCTTTTGCTCTAAAATCCTCCGACTCCTCGTCGGgtgATCCCAAGAGTTGGCAGAATCAGTCTCTCCCTGGAGACCCCAACTACCTGGTGGGAGCCAACTGTGTGTCTGTGCTCATCGACCACTTCTGAAGAGTGCAACAGCTGGCCTGTTACTGAATGTGAAACCATGGGAAAGGATGgataatacatacatacatacatacatacatacacacacacacacacacacacacacacacaccatttctcCAGGGGTGGACCATACACAATGATGTATTTACACCCAGTGCTCCAGTGTTGTTTACTGTGCCCATGGAAGATGGAAGGAGACTGAAGTTGCCCCTATGTGCTGTCCTTTAACTCTTTCCGAGGTCTTGAAGAAAATACAAAACGATTTAACCAGTGATGGAATGCATGCCCTGTGCCACTGAGTAACTCATCACATTATACGCCAAGTTTTAACTTTGAATTGTTACATAACAGGAAAATAGTTTCAGGTTTTTACTTTTGAAGTAGATGGACATACATGTAGGTGTATTTATACTATATatgcatacagtatatatagtatatggtataaATATAATTTTAAATTCAATTCTAGAAATCAGAATTCAAGAATCAGAATTCAACCTTTTTTGTCACCTTTTGAATTGGCTGACTTACAAAGACGGTCATATTTTTTTCCACATTGACAGATTTGTGATGGTTTTGGAATTCGGTGCCAGGGAGGTGGGCAGTAAAGTGATGATGTCAATGCAGAGCCACATTTTCTAAATGTATGGCTCTGTGGTAATGATTATGGTGATAGTGAAGTAGGCAAGCATCTGCAGAAGAGAAAATGAAGATGAAGGTGGAATACTTTGAGGTGGATTTAAAGCCCAACTCATATGCCTCGAACATGTTCATCCTGTGACTAGAATGGCTCTTCCTTCCtttccttttttctttctttctttctgtaaaCTGACATTGGATTCACTTTGTATTGACTACCTGAATTCTACTCCTGCTGTATCAAGATCTATGCATGTGCTATGACTCAGGTCCAGAAGCCTGCTCAGTTCTCCCTCACCATGTTAAAACCCTCTTACATTAACAAGCAGTGATGCCTTATCTGCATATTATTCACTTTTTCAGTAAAAACCTCTGGGTTCTTCTAAGTTATGATGATAAATTATGGACAAATGAAGTTCTCTTGCCATTTTGTCAACCCACTGTATAAATGAACTTGGGTTTAGCGCACAAGAACAATTGAAGCGAATAAAGGTATTCTTTCTTTATCTGCTATGCATATGACTtcagaagaaaaagaaaaacatgaCAAAAAAGACAAGTGGCTGTAAATAAAGTTAGCATATGGCCTTGGTTCTTGGTTTGTAAATGAACTTTTGTatgtctttgttattttgtataaaACTTAGAGAAaactgttttaaaaaataaatgaattgaCCATGGTTTACTTTCTAATCTGGTTATACCCTTGAGCCTTGGAACTTGTAACTATTAGCAGTAATAAAATCCACATTTTCTACCAATATATTCACACTACATATAAATAATAATTGTCACACAATCTTTTTATGGTTATTTGCAAAAGAGGAAAGTGCTTGGGTTAAACAACTTTTCAAACCTGTTCTTTAAAAGGGTGTGCTCTGTCCCCCTCATTTATTTGTGATACTGGATGCTGTATTATTTTGTGCCCTGAAATGTATTTTTGTACTAATAGACCATATATTACGGCACACCAGTACTATTTTCTTTATATATGATAACACAGCTTCAATTGGATATTAGCTCTTCACGTGTGGCTGACTTTTTTTCTCCTTTGTGACACAATTTTAAGTATACCACTGTATTaatgaataaaaacatttttaaagtagTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU603083 lncRNA upstream 1336 63361843 ~ 63362056 (+) True G532519
TU603070 lncRNA upstream 17924 63345187 ~ 63345468 (+) True G532506
TU602926 lncRNA upstream 113948 63248026 ~ 63249444 (+) True G532409
TU602927 lncRNA upstream 115504 63247269 ~ 63247888 (+) True G532410
TU602919 lncRNA upstream 116421 63245494 ~ 63246971 (+) True G532403
TU603187 lncRNA downstream 146131 63673977 ~ 63674925 (+) True LOC110526321
TU603880 lncRNA downstream 186273 63714119 ~ 63714435 (+) True G533228
TU603892 lncRNA downstream 211118 63738964 ~ 63739212 (+) True G533240
TU603893 lncRNA downstream 214786 63742632 ~ 63742965 (+) True strc1
TU603897 lncRNA downstream 216647 63744493 ~ 63744739 (+) True G533245
XM_021607169.2 mRNA upstream 39821 63250592 ~ 63323571 (+) False apba2b
XM_036980661.1 mRNA upstream 39821 63250594 ~ 63323571 (+) False apba2b
XM_021607170.2 mRNA upstream 39821 63295753 ~ 63323571 (+) True apba2b
XM_021607165.2 mRNA upstream 119794 63242443 ~ 63243598 (+) False mcee
XM_036980675.1 mRNA downstream 624 63528470 ~ 63675197 (+) False LOC110526321
XM_036980678.1 mRNA downstream 156217 63684063 ~ 63699115 (+) False golm2
XM_036980676.1 mRNA downstream 156218 63684064 ~ 63699115 (+) False golm2
XM_036980677.1 mRNA downstream 156218 63684064 ~ 63699115 (+) False golm2
XM_036980682.1 mRNA downstream 156218 63684064 ~ 63699115 (+) False golm2
TU603025 other upstream 19637 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 23894 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 164658 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 348406 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 540776 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 1241301 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1262476 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1585434 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 1628663 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 2319777 65847623 ~ 65849441 (+) True G535150

Expression Profile