RNA id: TU603064



Basic Information


Item Value
RNA id TU603064
length 791
RNA type TUCP
GC content 0.45
exon number 2
gene id LOC100750227
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63338236 ~ 63549030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTGTTAGAACCAAGCCAAATAGTAAATTGGTCTGAGTGCTGTATTTTCATGGTGAGCAGTTTGTGAAGGTCTAAACAGAGTATGATAATCCTCTTAACAACATAAGCACCaagcaattttttttgtccatgTCCAGACTGTCGACCTTCCTGTCTAGAGGTATTATGTCTGGTGGAAACATAGTCACCATTATGGAAATATTTGGCATGGCAACCTCCACATTTGTAGAATATGTGCTACCATCCAATTGACTTTTGCTAAGAGAGTGGTATTGTTTAAGAAAAAGTAATTTTATCCAACCTCAAAATGCTGGGCAATGATACTCGGAATTGGTTTGTGAAGAAGCAGATGAGCCGCAGGAGACCATCTGGCAAAAATAAGAAAACGTGGGCTGCCAAAATCCTGAGACACCATAGGGAGCGGTTACTGAAGGAGCTGGATGTCAACAAGGTGCTGCCATACCTTGTGTATGACAGGGTGTTCTCTCTGGTGGAATGCAAGGAAATCCTGGGTtatgacaccaataagaaaaggGCAGAGATATTTCTGGACAAGTTGTCTTTGAAGGGCCCTGGGGCCTTCTGTGctttctgctctgttctggaaGAGGTGTATCCACACTTGCTAACCTGTTTTCTGCTGGATATTGAAGATCAGCCTGCGTTGAGGAGCTGTCACAAGCAGGAGGGGGAAGTCATGGCTCCTCACAACCAGGGTGTGTTTCTATCTCAGGAGCGTACAGTGATGCACCCTCTATTCATCTATAACGACCCTCTCTTCAACACCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU602926 lncRNA upstream 88792 63248026 ~ 63249444 (+) True G532409
TU602927 lncRNA upstream 90348 63247269 ~ 63247888 (+) True G532410
TU602919 lncRNA upstream 91265 63245494 ~ 63246971 (+) True G532403
TU602918 lncRNA upstream 91623 63245456 ~ 63246613 (+) False G532403
TU603070 lncRNA downstream 5689 63345187 ~ 63345468 (+) True G532506
TU603083 lncRNA downstream 22345 63361843 ~ 63362056 (+) True G532519
TU603052 lncRNA downstream 125577 63465075 ~ 63549030 (+) False LOC100750227
TU603058 lncRNA downstream 180667 63520165 ~ 63549030 (+) True LOC100750227
TU603187 lncRNA downstream 334479 63673977 ~ 63674925 (+) True LOC110526321
XM_021607169.2 mRNA upstream 14665 63250592 ~ 63323571 (+) False apba2b
XM_036980661.1 mRNA upstream 14665 63250594 ~ 63323571 (+) False apba2b
XM_021607170.2 mRNA upstream 14665 63295753 ~ 63323571 (+) True apba2b
XM_021607163.2 mRNA upstream 94638 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA upstream 94638 63242399 ~ 63243598 (+) False mcee
XM_021607172.2 mRNA downstream 23894 63363392 ~ 63527846 (+) False LOC100750227
XM_021607185.2 mRNA downstream 112846 63452344 ~ 63527846 (+) False LOC100750227
XM_036980675.1 mRNA downstream 188972 63528470 ~ 63675197 (+) False LOC110526321
XM_036980678.1 mRNA downstream 344565 63684063 ~ 63699115 (+) False golm2
XM_036980676.1 mRNA downstream 344566 63684064 ~ 63699115 (+) False golm2
TU602734 other upstream 139502 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 323250 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 515620 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 1186018 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1358709 61971736 ~ 61979527 (+) True LOC110526282
TU605157 other downstream 1429649 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1450824 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1773782 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 1817011 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 2508125 65847623 ~ 65849441 (+) True G535150

Expression Profile