RNA id: XM_036980675.1


Basic Information

Item Value
RNA id XM_036980675.1
length 3603
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110526321
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63528470 ~ 63675197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATATAGTCTAATTATTTGTAGACGCAATCGCATAAGGCTATTTTTGGGAAGCGAAGTGGCACCGTCGTAGTATTGATTGCCCCAAACACGCTAGCTGCATCTCCTCCTGCCGCCGCGGGTAGTTTGATGTCTGTGAAAACCCTGCGCCTGTGTGAAACATCATACCCACGGCCACGCTCTCTGTGCATGGTACCCTGCCGCGCGTTTGACAGCGGAATACTAGAATACTACGTTAAAGGGCGACACTATTCCCGTGTCATTTCAGCTATACGTTTATACTTGCTGAGGTTCTTTAAAATGTATCCTGTAGCAGTGAAAATAAGGGAGCATATGATTTGATGGACCATTTCTCAAGCTTTTCCTCGAGAACCCGGTTACCTTAGCCAATAGCGCGTTATCCTGTGTTTTTGCGAAATCGATTTGGGTAGCAGCACAAGAAAGTCACTGCGCATCTCATCCATCACACTGTTGTAGCCTTCAGAATAACCGACAATTACGCATCTGCATCTTGGGATAATTAAGCAATTTAATGGAGACTCTTTCATTTAGTAGGACTGATGTTATTTGCTTTTTGGACACCGTTGCTTATCAAGCTTAACGTTTGGACATCGGTTACTTGCTTTGCTGTTAGGTGCCACTTTTGGATGCTGATGGAAATAGCTTAACCCATTGTTTTCAATAGCTGATACATACACTCTGTTTTCTTCGTGACAATGCCAGTCCAAGCAATGCCCCGAGGTCGTTCGCTCAGCCCCGCGTCCCTGTCCCGTAGCCTCTCCAGACTCAGAGAGTTTCGGACTCGGACTCGGATAATGCTTTCTCTCGGAGTTTCTCAGATGGTTTTGGGAAGTCTGATTTTGGCAGTCAGTTTTGCCGCTCTGGCCCTCACTACCTCACCAAGGGTCAGACATTCGTGTCCATTTTGGGCAGGTTTCTCTGTGCTGCTGTCTGGACTGATAGGAGTGGTGTCATGGAAGAGGCCTCTCTCTTTGGTGATCACCTTCTTCATGCTGCTGTCGGCGGTATGTGTAATGCTCAACCTGGCTGGCTCCATCCTGTCCTGCCAGAACGCTCAGTTGGTCAACTCTCTGGAGGACTGTCAGCTGATAAAGTTTGAcagtgacggtgtgtgtgtgtgctgtgaacTGCAACACCAGAGCTCCAGCTGCAACAACCTAGGAGAGACGCTCAAACTGAACCCACTGAGCGACTGCGACACCATACGCCAACACCTCAAGGAGCTCCTGTTTAGTGTGTGCGCCCTGAATGTCATCTCCACCATCGTCTGTGCCCTGGCCACTGCCATGTGCTGCATGCAGATGGTCTCCACTGATGTGCTACAGATCtTCATGCCACACAGAGCACGAGTCCTGAGCGCTGACTGCATGACCCCCCACGGCACCATCCTGCACCAGACCCTTGACTTTGACGAGTTCAtcccacccatccctccaccaccctactacccCCCAGAGTACACCTGCACCCCGGTGATGGACGGACAGAGAAGTCTACATCTGGACTTTCCACACTCCCCGTTCAGTACCATCTATGGAGTGCCCATCAACAGCCCTGGGACACTCTACCCCTCTGAGTTGCCCCCGTCATATGAGTCTGTGGTGGGGTTGGGGATGGGGCAGACCCCTGCCAGTCAGGTCACTACCAGCAATGATCAGTCCAGCCTCTGTGAGAGAAACGCCACAGCTGGTCTCAGTACTCAGGCCTCGGTGGACAGTGCCTCTCTAATGGTATCAGAGGAGGTAGCAGAAATTCCAGACCACAGTTGCTCCTCAGAGGATCTCTGTTCCCTGGAGGTGCAGGGCTCTGACTCCTCTCCCTATGGCACGCTGCACACCGCCCCCACTGATGGCAGCTCCATCAGTCTAGAGTTCAGTGCCCGCTTCTCCCACCGCCACCGCGGCCTGGCACGGGTCGACTACACTGGCTACAGCGAGTCCTCCCACACACAGGACTCCATACCCCACTCTCCAGACTGGTCCATAGAGAACGGCAACATACAGGAGCACGAGGAGCCCAAGGGAGGAGTAAAGCTACACGCAAACCTCAGAGAACGAGCCAGTAGGAGGCAGCTGATTCTTCCTGTCCCTcctactcctccctccctgccctctgcctccccctctgcaGCCGCAGCCACAGTCTCCGTAGAGGTAGCCACAGCAGCCCAGAGCCTCCCTGCCTGCCCCTCCACGTCCCCCCCTTCCCGGCCCCGTGGCTCCCGGCTGTGCTTCAGTGTGTGgtccccatcctcctcttcctcctgcccGGCCTCGCAGCCCCCTTCTACCTCAGCGCCCGCAGAGCGACCCCGCATGCTCCGGTCTGGCAGGAGGTATCGCAAGCTGGCTCGCATCGTACGCTCCACCAGCGACCCCATCTCCTGTACCTCCATATCTGGAAGTGACAGCTGTGGCTGCCCCTCTGCAAGCAACCCTCCTCCTGAAGATTCTCCTCAGACTTCACCAGAGCAAGAGTCTACAGAGGTGGCAGCTCCTCCCCACGCCGCTGCCAAAGTCAGCACCCGCAGTGGTAGGAAGCAGAAGGAGGGGAGGAAAGTGGACATCCGCCTCAAACCGCGAGCCCTGCACACGGTCTCCAACGAGCGCCCACACTCTCTGGCTGACCTCAAGACGTATAAAGACACCAAAATCCTGGTGGCCAAATTCCTGGAGCACTCCAGCTGCAGTCTACCTCCAGAGGTCCAGCAGGTGGTCAACAGCATCAAGTATGTCATCAAGTCTGACGAGAGACACATGGAGGAAGCTATATTCAGTGCCAATGTCATAGATCAGGTGATGACACAGTCACAACGCATCATCGGCAGCCCAAGGAAGCGTGCCCATGAAGACCTGCACCTCCAAAGCTGTGGAGCCTTGAGTTCCCCTTTCTCATCCCTGCGGCGTCCACCTATAGCACCAGGGCCTCCCAACCCCCCTGCTCCCCTGGactcctctccctcaccctctgaaCGCACTCAAAGCCTTTTGTGTAGAGAGACCATCCTTTGACCGCCCTCCCTCCCCACCAAGGACTCAACCCCTATCTCTATCTCATTGTGCCCTGTGAGATTGTGCCAAGACATTAGCAGAAACAAACTCAGTAAGTCATGTCTGGACTGGATTGGCTTCTGTTCTCTCTCATATCAAAAACACCAGAATGTTATTTTCTCCCTCAAGGGATTTTTTAAAGTCTCAACCTTGTAAAACACACTTGTAAGCCAACTAAATGGAGATGTCATGATGAAAAACTAGTGCTCTACTTTATCAAAAGGAAAAAAACAACTTTGTATTAAAACTGTGAACTGGACAGACTTGGGATGGTACTAGCTCCTGCAGACTTTATGGATTCTAACTCTGGCTGAATACTGTGTGCCACTGCAGGACAGAGAACTTTGCAAAAGTGGATTATTTAACTTACCTCAATGTGTTACAATTCTTATCAGTGTTACAATAAAATATGACTTTCTATGTTGTAGTCGACCTCCTTCTTTCAACAATGGTATATCTTTTGaacattacatacatttttaggaGGCACGAGAGGCGCAGAAGTCCATACTTAAAGAAGATGCATGGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU603083 lncRNA upstream 166414 63361843 ~ 63362056 (+) True G532519
TU603070 lncRNA upstream 183002 63345187 ~ 63345468 (+) True G532506
TU602926 lncRNA upstream 279026 63248026 ~ 63249444 (+) True G532409
TU602927 lncRNA upstream 280582 63247269 ~ 63247888 (+) True G532410
TU602919 lncRNA upstream 281499 63245494 ~ 63246971 (+) True G532403
TU603880 lncRNA downstream 38922 63714119 ~ 63714435 (+) True G533228
TU603892 lncRNA downstream 63767 63738964 ~ 63739212 (+) True G533240
TU603893 lncRNA downstream 67435 63742632 ~ 63742965 (+) True strc1
TU603897 lncRNA downstream 69296 63744493 ~ 63744739 (+) True G533245
TU603895 lncRNA downstream 82241 63757438 ~ 63757964 (+) True G533243
XM_036980662.1 mRNA upstream 624 63338529 ~ 63527846 (+) False LOC100750227
XM_036980663.1 mRNA upstream 624 63338529 ~ 63527846 (+) False LOC100750227
XM_036980664.1 mRNA upstream 624 63338529 ~ 63527846 (+) False LOC100750227
XM_036980665.1 mRNA upstream 624 63338529 ~ 63527846 (+) False LOC100750227
XM_036980666.1 mRNA upstream 624 63338529 ~ 63527846 (+) False LOC100750227
XM_036980678.1 mRNA downstream 8866 63684063 ~ 63699115 (+) False golm2
XM_036980676.1 mRNA downstream 8867 63684064 ~ 63699115 (+) False golm2
XM_036980677.1 mRNA downstream 8867 63684064 ~ 63699115 (+) False golm2
XM_036980682.1 mRNA downstream 8867 63684064 ~ 63699115 (+) False golm2
XM_036980679.1 mRNA downstream 8868 63684065 ~ 63699115 (+) False golm2
TU603025 other upstream 184715 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 188972 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 329736 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 513484 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 705854 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 1093950 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1115125 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1438083 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 1481312 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 2172426 65847623 ~ 65849441 (+) True G535150

Expression Profile