RNA id: XM_036980679.1


Basic Information

Item Value
RNA id XM_036980679.1
length 3863
RNA type mRNA
GC content 0.44
exon number 9
gene id golm2
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63684063 ~ 63699115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAACCCAACCATGCACCTTGCACGCCTTGGTTACACTTCAGAAATCTGAAATTGATGGTTTGACTAACTAGCTTGTATTGTGTGTCTACATTAGCTAGTCTTTTGTCAATGTTACGTTAACTGTCTAACCTTTTATAACGATATAGCTAACCACTGTATTCAACGTCGTTTGCGTTTCGTATCCACGAGTCAAGAGGCACCAAAAACAGAGGATATGCCAGCCAAGCCAAGGTGGAAGTAGCTAAAGTAACCATATCAACAGACAAGACAGGCTCGGGACGGGTAAAACAAAACTGATCTGATTAGGAATATGACCGCAAACTAGTAAGGGAAATTGTTATCTATCGTTAAAATAATCGTTTACCTCGTGTAACCTTATTTCAATGATTCTAGTAGCTAGCTACAAAGAACGTATTGCTATCCTATGTTGCTATCTCGCGTAGTAGCTCCAATGATTAGCAGTTAACGCGTAGCGACTACGTTGAATTGCATTGGATAGTGCTATAAAGGTTAGCTAGATTAACGTTTGAATACAGTATTTTCTATATACATAATTAAGATCCATAATCAAGATGTATCATTAGGATGGCAATAGTTGCTTTCTAGTGTCTGACTAGCACTTTCAGTGCAAACAGCTAGCCAAACCAGTTTGGTAAATCTGTGTTAATGCAGTCAGGTTGCTAATGCGTTAGCTACCTACTGTAGGTTTACGATTTGGTGGATAAATACACTTTTTCTATCTATCTTGAAATGATTCAGGGCCTACCAGAATCGTTCAGATATTTTGACACCGGACTCGTTAGATAGCTAAATAATTTGTCACTTGCATGCTTGGCTAGTGTTTGTCCACGTTTGCTGTTACATTTAGGCCACGTCGCTGCAGATGCATTTCATCCACTGACAGCGTCGTTGGATGAATGCAAACAAGACAGGCGACAACTGTGCGGAAGAGGGAAGGCGCGTGAATAACTATTCCCCACATTCCCTGCAGCTAACTAATGCAAGAAACTCGTTTGGGGTTTGTTACAAATgctttctttactgaccatctcAGTGGCTGTATGTTTGCCGTAATTGAACGGCATGTCAGCTACCCAATTTGTTTACCAGTGGAAGCATAGGCTTATTTAGTTTTCTAGATCAGTTATCGAATACATTCTGAAATGGTTGGCTTTGGCGCAAACCGACGAGGAGGCCGTCTCCCGTCCTTCATCCTGATCGCATTGATGGTGATCATTGCCATACTGTCTTTCAACTACTGGACTGTGTCCAACAAGCAAGGGCGCCTGTTGGACGAGTTGGCAGAGGTGCAGACACAGGTGAAGCGGACCGACGCGGCGCGCAGTCGACTGGAGAAGCGCAACTCGGAGCTGATGGTGCAGGTAGACACGCACAGGAAACAGATCGATCAGAAGGATGGAGATAACAGCATACTGGATGGCAAGCTGCAGGCGCGTGAAGCACTCATCAAAAAGTGCACAGATGAAAAGATGAAGGTGCAGGGTGATGTCACAGCACAGATGTCGGAGATTGTGAGGCTGAAAGagcaGCTGAAGGAGCTGAAACAGGAGTTTATGAGGCAGGAGATCCAGCTGAGGGAGGTGAAGAAGAACAGCACCAACCTGGAGAGGAAGTTGGAATATGAGAGTTTGCAGTGTGGGCGTCAAATCACTCAACTAATGGACGAGTATGAAGAAGCTAAAAAGAccctggaggaggaggtggtgaagCTGAGAAAGagTGTGCTGGATAGCAGGAAGGCTGGAGCTGCAGAAGGAGGGACTGAGGTGGAGACCGCAGGAGAGCACCCAACTGTGGCCACACACCGAGACACTGACCTCAAAGAAGATTTGGGCAAGCCTGGCAGTGATGCTGGAATGCCTGGTATTGAGGACAGTGAAGTGGGAAAAATAGATGATGTGCAATTTGcCCTGAAGAAGCCAGCCATCACCCAGAACCACATAGAGATACCTGATACTGGGCTAAGAGAGGTGGGGGCCGGTATGGGGGCAGGTGAGGGGGCTGGTCGAGACCTCTCTCTGGATCGGCCTGTGCTCCAGATCCAGGACAAGGTCatagggctggggctggaggGACGAGTGGGGGCCCTCCAACAGCAGCCCCCCCAGGCGGTGGCAGACAGACCCATCCTCTTTGATGAGGACAACAAGGCAGCCATCCAGGCAGATGAGTTCGGAGAGCAGCACAGACCACTTCGAGCTCCTGCCAATGTGATGAAAGTGGATGGTGTACAGAGGAAAGGGGCAGAACTGCCTCTGCCTCCTAACCCCGCCCAGGTGCCCAACCCTATAGAACCTCGGCATGCCAGAGACCCCAAGCCTGCTGAGCCCCTGCGTCACAGACAGAATGATGAAGATCGAGACATGCAGGGAGACCGGGCAGTGGACTATGGGAAGAGACGTCAAGCCATCGACATTCTGTAAACCTTGTCCACTTGCTCTAGGATCTGGGATAGAAAATTCAAACGAAAGCGTTTATTCCTCCGCATTGTTTCAATTATGCTACGGATGTCATTCTTGGGACTGGTTGAAATCACGAAGATGTTTTTAGCTGTGTCTCTTATGGCGATGGACAATTCTGAAGACACGATTACAGATTATTATTCCATGAAGCAGTTTGACCTAAAACCATGTATCATTGAATCTATAAAACAATTCATGATAATATCATTCTGTGCAGCTGTTGACTTGCAACTATATTTGTTTTATAACTTATTTGGTATTAGAATTCCTTAGCGATTACATTGATATAATGTACCAGAGTGCTATacagtatacattttttttttcttcccatgaCCGATTTATGAAGGCTTTTGTTTTGTTTACTACTTTGAATGAACTGTCAGCTGCAAGAATAGACTGAAGTGGTCTGGAAGAGCCAGTTTGGGCCAGAACCTCACTGTCTTGGATGACTCTGTTGCTGACCAGATCACCTAGACTGGCAGGCATGGCATATTGTTTGAAGCTGTCAACTTTAATTTGACTTGTCTTTACCTAAAAAAGGAATGTTTCCCTTTTGATGTGGGACAACTGTTGCTTGATAAAGAAAAATAACTGAACTATTGCTCCAAACTGTGTCAATGAATTTGACAGGACAGTTTCTTTGGCACTTTCTAATTGTTGGACTCTTGTATGGACGCCCACACTTCAAACACAGCGGCGCCAACCAACGCAGCGCTTATGCCAAGGACTTCTCATGGCTTCTTAAACCTATTTGTTCACCTTATTTCTGTCAGACATAACACTCAAGTGCTCATTCTGTCTTACAATTATGCTGTTATTAATGCATGTAATTTTTATTAATCAACCTGAAGAACGTCTTGAAGCTGGAGGCAATACTTAGACCAGTTTAGAATTAGGAATCCTGTGGAAGACTAAATGCACATCTGTCCTGCTATTATGAATGGACTACAGTAGGCATAGATGTACATATTTGAATTGTTCCTATTTTAACTGTAGGACTCAAAGGACTATTCTTCCTTTAAATAATAAGCATAATCAGTTTTGTTTAaaagttagattttttttctcatatgGAAGGTCGGCATATTGAATGTACGCTGCTGATTTGTTTTTTCAAGATCATAATGTAATTAAGATATTTGGGTAGTTAATTGTTACAAAACTGAATAGATGCTAATAGATAACTGTGGAACCAGTGAACTTGTCCCCAGCTAAGGTTTCCCTCAAATTCCAACGTGTTACTGATCTGCTGGGGATTACTAAAAGCTGTTGGTATCACTGATCTTGGGGGTAATTTATAATTTCATACTGAAGAATAAATAAGTGGTCATTATTGATACAAGTAATTAAACAATTGTTTCTGTTTCCCCCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU603187 lncRNA upstream 9140 63673977 ~ 63674925 (+) True LOC110526321
TU603052 lncRNA upstream 135035 63465075 ~ 63549030 (+) False LOC100750227
TU603058 lncRNA upstream 135035 63520165 ~ 63549030 (+) True LOC100750227
TU603083 lncRNA upstream 322009 63361843 ~ 63362056 (+) True G532519
TU603070 lncRNA upstream 338597 63345187 ~ 63345468 (+) True G532506
TU603880 lncRNA downstream 15004 63714119 ~ 63714435 (+) True G533228
TU603892 lncRNA downstream 39849 63738964 ~ 63739212 (+) True G533240
TU603893 lncRNA downstream 43517 63742632 ~ 63742965 (+) True strc1
TU603897 lncRNA downstream 45378 63744493 ~ 63744739 (+) True G533245
TU603895 lncRNA downstream 58323 63757438 ~ 63757964 (+) True G533243
XM_036980675.1 mRNA upstream 8868 63528470 ~ 63675197 (+) False LOC110526321
XM_036980673.1 mRNA upstream 156219 63338529 ~ 63527846 (+) False LOC100750227
XM_036980684.1 mRNA downstream 3182 63702297 ~ 63727830 (+) False LOC110526325
XM_021607198.2 mRNA downstream 3183 63702298 ~ 63727830 (+) False LOC110526325
XM_036980683.1 mRNA downstream 3184 63702299 ~ 63727830 (+) False LOC110526325
XM_021607196.2 mRNA downstream 3185 63702300 ~ 63727830 (+) True LOC110526325
XM_036980685.1 mRNA downstream 31319 63730434 ~ 63757238 (+) False strc1
TU603025 other upstream 340310 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 344567 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 485331 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 669079 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 861449 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 1070032 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1091207 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1414165 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 1457394 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 2148508 65847623 ~ 65849441 (+) True G535150

Expression Profile