RNA id: XM_021607196.2


Basic Information

Item Value
RNA id XM_021607196.2
length 4421
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC110526325
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63702297 ~ 63727830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGACGCCTCTGGCTCAAGCGGTCCTCAGTCATCCGGGTATCTGCATCGAGAGAGTGTGGGTGAGGAGGCGGGAAATGGCGTCTGGGAGCACATCGCAGTATCAGCTACTAGACGGTTCATAAAAACAGCACAGCAGAGAGGaaacaagaagaaaaagaagaagaagcagctGCTGTCCGCACCGTGGCAGCCAGCAGTGCTTGATCAGTCAACTCGTTTTCGAGATACTGTGGAGTACTGTAAATCTTACATGTGGCTCTTAAAACAATGAGGCTGAGAATGCGGAAGGCATCTCAGCAGTCGAGCCCTGCCCATGCGCCCCGCACATCCCGGACCAAGCGGAGGCATTCAGAAGTGGAGGAGTGCACGCCGACAGGTGGCGGGAGAGGCCTGCTGTCCACCATTAAGCAATTAATCAGAGGCAATGCTGTGAAGGTAGAGCAGGAGAACCCAGCGAAGAAGACACGGCTCACCTGCGATGTCGACGACAACCTGATCTCTTCCACACCACAAGGTGGCGATGCCCCCAGGAGGACCATCTCCAGGGTCAGCAGGAGAAACTCGGTCAACGGGGAAGCGACAAACCATGACACGAACCATGATACGAGTTGTAAGCCTGTGAAGCCCAATGGGAAGCTGGAGGAGGCGGCAGAGACTTTGACCAGTCCGCCTAGAACCACGCTCCTGGGAACCATCTTCTCTCCAGTCTTCAACTTCTTCTCACCAGCAAATAAAAATGCTACGTCAGGTTCGGACTCCCCAGACCAGGCGTTGGAGGCTGAGGAGATCGTCAAGCAGCTGGACATGGAGACTGTGGAGGAAACCCCCACCTGCACTGCCACCTCCACAGAGGAAGTGTGTACGACTATGCCCCTTTACCCCAGCGACATGCTGCCACCATTGCGGGCTCCACATCCTCCAGAAGTGCCTGTCGAGGAAGAGGAGGTCGTCACAGACATGCCTGCTCTCACAGCCCCAGGCGCCCCTCCAGAAGGAGGCTATGTGGTGACACAGCCCACAGCCCCTGCAGAGGGGACATACGAGGAAGACTGGGAGGTCTTTGACCCGTATTTCTTCATCAAGCATGTACCTCCACTGACAGACGAACAGCTGACCAGGAAGCCTGCTCTCCCACTAAAGACTCGCAGTACACCAGAGTTCTCCCTGGTCCTCGACCTGGATGAGACATTGGTGCACTGTAGCTTAAATGAGCTGGACGATGCAGCACTTACCTTCCCGGTCCTGTTTCAAGATGTCATTTACCAGGTGTATGTGCGTTTAAGGCCGTTCTTCCGAGAGTTCCTGGAGCGCATGTCTCAAATCTATGAGATCATTCTCTTCACTGCCTCTAAGAAGGTTTATGCAGACAAGTTGCTCAACATCTTGGATCCCAAGAAACAGTTGGTTAGACACAGGTTGTTTCGTGAGCATTGTGTCTGTGTACAAGGGAACTACATCAAGGACCTGAATATCCTTGGAAGAGACTTGTCCAAGACCGTCATTATTGACAATTCACCTCAAGCCTTTGCATATCAGCTTTCCAATGGGATTCCCATTGAGAGCTGGTTCATGGACAAAAATGACAACGAACTCCTGAAGCTTGTCCCCTTCTTGGAGAAGCTTGTTGAGCTGAATGAGGATGTGAGGCCACATGTTCGAGAACGGTTTCGTCTGCACGAGCTTCTTCCCCCAGACTGATCCCTGGAATAGACGGACAGAAGAAAAAACGAATGATTGAATAAACCAACACAGACATGTAAAAAGCCCTCTTTTGGATTATAACATTGCCATTACTGTTGAAGGTttcactttttctctctttttaccCCACATAGTTTTTTTGCATCGATAACAACAAAGTGCAAAGTCTCCATTTTTTTTTAAGCAACATCTGGTTAAAAAATAATTTATAAAGCCACATGTTTAGATCACATTACTGTGGGCAAGATCAAGAAGGCTCCTCCTTTTGACTGGCTTTTTATCAGGAGCAGTTTCTTTCTCCTGGCTTCTTATCGGAGGGGCCAAggtgctgtctgtctggttggaCAGAATTGTTAGCTGACTGAGAAGAGGATTATTCTTGCTCCCTTTGGTGCTTTCATGGGACTGTTGACAGTGACACTCATTGGCTTTAGACCAATTTTTAACAGGAATGGCCAGTAAAGTGTGTATGGGTACATAGCCCATCTTTTTCTTTCCATCTTGGGATTTTATAAACATTTTACCTGTAGCCTATAGGATCTCATTATGCATTCCTCTAGCTGaatttcttttttgttgttgtagacaCTCATTGTAACCGCAATGTGTTCTTTTACCACATTTCACAATGTTGTATTGTTTGCTTTTTTCTGGCTATGTTTTATGTAGATGTTCTCCAAGGCTGTTGATTGGAAAATAATATTGTTAGGATATCCCCAtgctatgtcaaatcaaattgaacCAATTCAGAACTTCCTGTAAAATGTGTGCTTCTGTTTAAACAATAGTTGGCTTTGTTTGAATTTATAGGACACTTTGCCAAAAATCTATCAATTAGTGTAACTTTCAAGAAATTTACATCAATGGACAGTTCATTGTTTGTGACCAAATGTCCCCCACTTCTCAAGTGAAGTGTTACTGACATTTATTTTATagtaacatttttatttttcatatatttcaatgtattttttttacattgaaatatacatttttacataACCAAGGTTTTATTTTTATGGATATGTCTAGTATTGAATTATAACTAATGTAGATTGTCTCTGTCAACATCTCACCCCTGTCTGTTACTGGGGACAGATGGATGGTCCTGAAACAGCCCAATGTGTAGCACCACCAGCATATAAACAGCCTCATCACTGTGGTATAAACCCAACCTGCCTCTAGTAGTTTTTTTGTTTTAGGAATTGGTTTTATTATATGGCTTTAAAGCCTTTCTTTTAAATGCAGTAGAAAGAAGCATCATTATTGGAGGACCTTTTGTTATGAATGTCTGACTGTCTCTGCCCAGGAGAGTTGTATAAAAATATACCATGATGCATTGTCAGAAATTGTACCTAATACTTATGTTATTTCATGTGGACTAACCAGATCCCAGATCATAGACACTTTATTGATGACCGATAGCTTAATAAGAGAAAATTACACCCAAAACGTTTACCTTTCCATGTCCATTTGGCCCTTTTGTTGATATTATGGACTTTTACATTAGCTTATACATTTTCCATGTATATGGTGCCATACAAATCTCCTTCCTAACATGATCAAACGTCGCCACCcatgtctttattttttaaatctcattGGAAGTGTTTTAAGTCGGAGACAATCAAGCCTCTAAGATCAAAACACTCAAACCGGAAAGGAAATTCTGGTCCGTTTGTTAGTTGCGCTGTTTCTTTTCTAAATTGAATTGTTAGGCGTCTCCAACTGCCCTATCCCAGCTAATCATGCACGTCATCTTGCCAAACATCTGAAAGACTGAGGGTAAAAACTCAGTAGAATACCAGTCCTTTTAGCCTGCTCTCTCATTGCCTTTCTGGAAATCATCGCCCTATAAAACTGAACTGACCTAGTGTAACTCGTCTATTACAGGGCACGTTGTTTTTTGGCGACGTTCAATGTTTCCAGACTATGAATGTAATTATTTTCCCACGCTTGATCCCAAAATGTGGGGGGAAAATGAACAAATCAAAAGTCCATGATCCAAAGGATCTATCAACTTCTTAGATTTTCTCTGCTTTGAAGGGTGCACAAAGAGTAACATTTTTTTCACcgttataaaaatatatataaataatgaaCACCCTATTCTATAGCATTTTCAAATATGCAACCCTATCCATCCCCACTTTAGCGGTTGGTTGAGAGTTGGCCCTAGGAGGATGAACCTGCTCCTTAAAGGGGGCCTGGCGCTTTTCTATCAAGGGAGAGCTTACTTTGTAATTGTTAAAGGATGGGCTATTTGACATGTACATCCAGTTCATTTTTATGTATATTATACCTGTTTTATTGTACAATACATGCAGCTTTGCATTAAAAGAAAATCCTTAAAGGAAaatcttattttttatttcaaaagGCATGTCATCTACTTTTTAAATTGTATTCATTAAGATTGAACTTTACACCAGATGGTGTTTTTCTTACAAAGATCTGTATGTTTAGTTAGGACAGTGTCACTGAACTGTTAGAAACCTAGCATGTATGTAGAGAATCTTGTTTTGTGGGAAAGTCCTGAATTAAATTTTGATCTTGGCACTTTTTCTGCAGAAAAGAGCAACTGTGTTAATTAACTTTTTCAATTTCCAATAAGatgtatttaaaatgtatttttaaatgcTTAAAATTACATATTTGTTAGCCATGTTGTAAAATGTACATACCAAATTGCGTTGAACAAAGTTTTAAAGTTAAACTA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K17616 CTDSPL2; CTD small phosphatase-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU603187 lncRNA upstream 27375 63673977 ~ 63674925 (+) True LOC110526321
TU603052 lncRNA upstream 153270 63465075 ~ 63549030 (+) False LOC100750227
TU603058 lncRNA upstream 153270 63520165 ~ 63549030 (+) True LOC100750227
TU603083 lncRNA upstream 340244 63361843 ~ 63362056 (+) True G532519
TU603070 lncRNA upstream 356832 63345187 ~ 63345468 (+) True G532506
TU603892 lncRNA downstream 11134 63738964 ~ 63739212 (+) True G533240
TU603893 lncRNA downstream 14802 63742632 ~ 63742965 (+) True strc1
TU603897 lncRNA downstream 16663 63744493 ~ 63744739 (+) True G533245
TU603895 lncRNA downstream 29608 63757438 ~ 63757964 (+) True G533243
TU603998 lncRNA downstream 67375 63795205 ~ 63795548 (+) True G533337
XM_036980676.1 mRNA upstream 3185 63684064 ~ 63699115 (+) False golm2
XM_036980685.1 mRNA downstream 2604 63730434 ~ 63757238 (+) False strc1
XM_021607199.2 mRNA downstream 30413 63758243 ~ 63762887 (+) True LOC110526326
XM_021607204.2 mRNA downstream 298855 64026685 ~ 64031533 (+) False LOC110526331
XM_021607205.2 mRNA downstream 298857 64026687 ~ 64032292 (+) False LOC110526331
XM_021607203.2 mRNA downstream 298861 64026691 ~ 64032292 (+) True LOC110526331
TU603025 other upstream 358545 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 362802 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 503566 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 687314 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 879684 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 1041317 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1062492 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1385450 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 1428679 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 2119793 65847623 ~ 65849441 (+) True G535150

Expression Profile