RNA id: XM_036980685.1


Basic Information

Item Value
RNA id XM_036980685.1
length 6771
RNA type mRNA
GC content 0.52
exon number 28
gene id strc1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63730434 ~ 63757238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCGTTAGCACCTATTCTTTTGCCACTGTTTCTAATTGAGCTACTTTTAGCTCATGGATTGAGTTTCAGGTGGACACGGGAGCGGTGATGGACTCGAAGGGGCAGGTAGAGATGTTCGCTTAGCACGCTATGTAAGTGGACCACAACTTGGCAAAGCGTAAAAGGAATCTGAAGTAGGGAAGCAAGAACCGATACAGGGGAGACGACAGAATGGCTTTGACAAAGACCGGCGTTTGATTTTGGTTACAGGAATGTCAAAAAACTAAGGATGATTGGCATAACTATTGCATTTGCAGTGAGCCTGGATAATAGGCCTAAAAGTGAATCTTTTTCTGAATCCACTGGATAGTTAGCATTTTTGTGGACTTCTCAAGCTACTTTTCCCCTATACTTTGAGAATGCTGCTAAGAATGCAAATATTTTTTGCTCTATGCATCCTAGggATGGTTTGCGAAGCCGCAAGACCAGTGCGCTCATTGTCACGAGCTGTATCAAGAAAAGGTCCCGCAGACGCCAGCAAGTTTGACAGAAACATAGAAGAATTGATAGAGCGAATACACGATTTATCCAACGAAAATCACAACGTTGATGCCAATGCCAGGGGCGGCATCAGCGCAGAAGAAATTTTAGAGGACCCAAATGTCAGGACAGGTGGCACCGTGTTAGAGGGCATTGACTTGAGCGCTTATTATGGTGTTCTGGGCAAGGTATTTGCCATGTATAGACCACTAATAGAAGATGGATTTATAGAAAACCTCCCTAAAACGTTTGTGTGCATTTTGTCTGGGAGAACGGACTGTGGCTTGGAGGCAGAATTGACAAAGACTGTATCACTTGAGCTTGGCAAACCGCTACTGTCGCTTCTATCATCTGTCAAATCTCAGACATGCACAAGAAGCAGTACAAGTTCAGAACCGTCACTTTTTCAAAGATCCTACCTCAGAGTAGACGATTCCACAGTAGAACAATTCAGTGTTTTTCAGGAGATAATGACTGCTTTGTCACATCTTTCCTTATCTGATAAAGTTATGTCTGCTTGGACTGGTCTAATAGACATGGCATTTCCTGCTATAGTGACACATTGTTCAGAATTCATATTGACATTTCTCCAAACCCCAATGGATTATGTAAAAATAGCACTGCAATTTGGAATTGCAATTCCCGCTCTGGACCAAAATGAACAATGTCAGCAAGGGGATCTAAAGCAGCTCCTGATGTGGGGTATACGTCACAATGTGAGCTGGTCCTTTGGTGACACCATCTTGGACATGTTCCTGACTCCAGAATCAACACTGTGCAGCTACCCAGACCCAGACTGCCAGAGCCTCCCCACAGTCTCCTTCAGCCGTACCCTCAAAGCGGTAGAGGACAACCCCACTGCCCTGCTGAGGTGTGACCACGACAACCTAGCCCGTTTCAACGACACCCTGTGCGCTGACATCATCACAGTGGGCCTACAGAGCTCCTCAACACTTTCCACTTTCTGCAACGCTCTGAGCATCCTGAACCCCACTGAGGTGGAACAGGTGTGGAGTAACACCTGTCATGTTATCCAGGCTCTACTGTTGCCCCTCCTGGAGGACAGGTCTGACTGCAGTGGGGACATGCCGGCCGCGCCTCCCCCAGGCCCACGGGTCTCAAGATCGCTCAGCCTCAGCCAGCTGCTGTGCAACTACGGCAACTGGACCAATGCTAGTGACGTGGACGCAGGCCTGGTGACACTGTGTAGTGAAAATGACAGACAAAAATTCATCCTAGCGGTGTGCAGCAATATCCAGCTAATGCAGGCATTGATGAACAACAATCCTAACAATAGCTGGCTGTGGAATTTCTGTGTTAACTCCTCTGATGGATACATGGTGAGTCAGTTCTGTAGGTATCAGACCTGGACGGCGGAGACAGTCGACCCAACCATGGTGGCCGTCTGCTgggaccaggacaaggagaggcTGAAGATCCTCCTCTGTCAGAACCTGGACTTCTTCACGGTTGTGTTTTCACATGTTGACAACAACTGGCTGCAGCTTAACTGTACAGAGGCCCCGGCACAGCCAGATATAAACTCTCTGGTGGCGGCTTCCTGCCAGTACTCAGAATGGCGAAACGTGATGGAAATCACCATAGAGATGATATCCATGTGCATCCAGAATGATGACAAGGGTTTTGTACTGGAGGTGTGCGCCAATGCCACCTTTCTGAATGAACTGCTCCGTAATAGTGCTACTGTATGGGTTGGAGAATACTGCACTGTCTCCCTTAACTCTCCACCCACCAACCCGCCTGTGGTGTTCAGCATCCCAGACTGGTGCAACTATGATAAGTGGAGCAAGGTGCTGGTGGACCCGTCAATGGTGGAGCTCTGCTGGCGACACGACCAGATGGGTTTTAATAAGAACGTGTGCTGCAACATGCCCCTGTTAGAGAAGCTCACTTTGGAGCCCCAGAACGAGTGgctcatgtctgtctgtgtcgacAAGGAGACCAAGGACATCCTGCCCCAGGTGTGCAAATACTCTGACTGGAACAAGCCCATCATTGTAGACATGACTGATCTGGCTCTCTGTGCTGAGCTGGACTCTCTGAACTTCACTCAGAAGGTGTGCGCCAACACCACGGTGCTCCAGAACCTGCTAGCCAACCCTGACAATACATGGCTGTTGGCGTATTGTGCAAACCACACTGGCCCCGGCGGtggagggggacagggaggaggCCTGATGGGGTTTAAGCCAGTAGAACAATGCCAGTACCACAGCTGGACAGTGGCACTTCCTGACACCTCTCTCCTGACCCTGTGCTGGGACTACGATCAGGCCAACTTTGTCTCATCCATCTGCACCAACACTGGCCTCCTCTCCCTGCTCACCAAGGAGCCCTACAGCCTGTGGGTGGGCACGCTCTGTACCACCTACACCAACTACACCAAAGGAAACAGCCAGGGAAAaagcaacaacacctccacaGACTCCCAGCCCTGCCTGGTCAGAGACATTGTGAGGAGGCTGAACTGGACTTGTACTGCAGACTTCAGCTCAGCCTGTCAGCCAGGCTCCAGTCAGACGCAGGCTCTGCAGCTGCTTTTGCGCTGCGGGGTGAAGGCCCTGCAGCATCGCTTGGAGGGGCTCCTGACCCCACACACGGCCTCTGTGGTGGACCAGGCCACCAGTGTGGCCGTGGTGCTGTTGGTGGCCCTGGAGGAGAGCCAGATGATGTCTCTACGTGTGACTGAAAACATCCGCTTCAATGTGCTCAAGTCTGTGGTGCTCTATCTAGAGAAGGAGACCAACTTTGACAACAAGAGGATCCTGCTGCAGTGCTTTGGGAAAGTACTGACCAGTTTGATGCAAACAGGAAGACTTGGGAACAGTGATGGATTTTTCCTCATCAAGGAGTATTTCCGTATCCCTCTGGCAAGTCTGAGGGCAGTGCTGGGTGCAGTGGACATCACCACAGTCAGACAGATACTGCAGTACTTCAGCAGGAACCAGGGAACATTGCAGTTTACAGATGACTACCTAGGCACCATGGTATCTGTGCTTTTCCAGACCCACTTGGTCAGGGACGGGAGCCTCTTTCCTGAACTGGTACCCCTACTTTCCCTGGTCAACCCTGCAGACATCCAGTCACTGCCCCCCTTACAGACCAACCTCATTGTGAGAAATACCATCAACAGCAACATCAGGAGCCTGTCGGTGGAGCAACGCAGGGCCTTTGGGAGGTGGTACAGCCGAGCCCTCAGCTCCCTCAACATGACAGCCGGCGGCCCCTCCTTCATCAGGGACACTGGTAACCTGATAGTCTACCTGCCCTTTCACAGCTTCCAGCACCTCTCACCTGCTCAGCTGTTGGTTGGAATGGATGTGTTGCTGATGAACACCCTAAGCCAACTACAACAGCAGTTTGTGGCTGACAGCCTCATAAGGACCTTCAGAAATCTAACAGTGGAACAATTCAGGAGGCTTGGCAACCTGACGTGTCTGTCAGACCCAAAGGACCTGCTGGTGTACAGAAACTCGGAGGCCTTCTCTGTGATTCAGGACAACATTAGGACATGTGTTGCCCAGGGCCTCAGGGGCCCCAGTGACATGATCTCCAGCTTGTTCCTGAACGGGAGTGAGCTTCAGTCTCCTGGCTCTCTCTCCGCCGGCCGAGTGTCTCAGCTGGCTCCCTTCTTGCCCTGGCTGGGTGTGGACTTCCTGCAGAAGCTCAGCCAATCCCAGCTCAGCCCTGTGCTGACAGCCCTGGCCTCTGTGCCCTTCACTCCTGCACAGGCCAGTGTAATTGTGGACAAAGTGTCTCTAAACAACAGTCTGTCTCAGCCGGGGCAGCTGCAGAAGCTGGGCTCTCTGGTGAGTGGGGTGAAGGTTGAGACTCTGTGGAACTTGCCCTCTGACATCCTGCTGTCCTCTCTGCCTGACATCGCCCTGCATACGCCCGGCCTCAACCCCCCACAGgccaacaccatcaccaccaaactcTGGGACTCACCAGAGGTGACTGGCTGGTTGGATAAGGTGGAGCCCCTGCTCCCCAGCACCCCTCTACTCAGTGTGCTGACCAGGGCTAGTCTGCTGTTGACCAACAGGACCTTGGCAGGAAGACAAGCCTGGAACACTCAGCAGGCTAAAACTCTTTTTAAAGAAGCAGTGAAGACCATGCCCAATCTTTCCGCTGAGACGTTTCTTGCCCTTGGAAGCATTGCTCGAGGTGTAAGCTGCACAGCCCTGCGACAGCTCTTCCGGGACAAGCCAACATTTTCCTCAGTGCAGAGTGTCCTTGCATTCATGAATAAGCAGTCTGTTCCTCTCCATTCCTCACTGAAAAAGTGCATCATCGAGGAGCTGTACTACTTTGACTTCTTCTCTGAGCTGCTGGGAGAGTTTGGCGCTCAGATCACACTAGCCCTGCCGGTGAGCACTATTAAGAAGTTCCCTGCCGACATGATGGACACTCTCAGGAAGATGATTGTGAAGGACTCCCATCACTTCCTGCTCCTACCCAGTACAAAACAGGATGTTCTGGTGGACAAGATGGTGCAGAGACTTGGCATGTACACGGGGGAGTTCACTGAGGATGAGTTCCGTTCACTGGGCATCATGGCGACCTATGTAGTGGATGAGGTGTTTGTGCAGCTGGTGCGGAGCTTCTTTGTGGAGAGCCTGGAGTTCCTCCGAGAGTTCTGCTATAACAGCAGCAAGAGGGACATCGTCGCACAGATCCTACAGGAGCCTGGCACCTTCGGCCCCGTTCAGAACTGGACCCCTGAGACACTCAATCAAGTGGACAGATTCTTATTCTTCCTTCCCAAAGAGACGCTGCAGCAGATTCCCCAGGCCCTGATGACCCAGGGGCGTATAGAGAGGCTGTTTCTGAGTCAGCGCCGGTGGGAGTCGGGTGCTGTTGGGGCCCTCTGCATTCAGGGCCGGGACCAGGTTGAACAGACAAAGCTGTTTGAGAGGCAACAGTTTGTTCTTCAGAACTTCCTGGGTTTTCTCAAAGTGGGGCAGGTCACACCTCCTGCATTGATGCCCACATGTGAAAAGCTGCATGCAACACAGCCTTCAGCCTGGAGCACAGACAGCTTGACAGGCATGTCGTCTGCCGCCTTCAGCTGTAGTCTAGAGCTCTTTGGCCAGGACCCCTTCTTTTCATCATACCAACAGAAACTACTCCTCCAGAAAACTAAAGAGATCTATGGAGCGGCTCGGTCCTTCTCCTCGTCTGTGATTACACAGCTGGGTCGTATAGCCTCCCAGCTTTCAGTGGCAGAGCTGAGTGTGATCCGGCTGTCTGAGCTGAGCACCATCTCTGCACTGGGGGCAGTAAGCACCTGGAACAGCAGACAGCTGGCTGTGCTGTCCTCCTCTGTGCTCAACTCCACCCAGATGGGTCCTAGTCAGCTGGCCTCCAGCACCCTGGTGGCTATGGGACACATACTGTGTGGGATCAAGGACTCAGACATGCGCTCCCTGAATGCAGTGGAGTTCAGTAAGGCAGTTCTGTGGCTGGGCCGTCTGCGGCTGTCCTGTTCAGAAGAGCAACAACAGGCTTTAACGGGACTGCTGAGCCATAGCCTGGCTTTTGGACCCATAAGCTCCTGGGGCCCTGAGGTCTTCATTGAGGTTGGAGCACTAGCAGCTGGCCTCCCAGATATGGCCATGTCTTCTTTGGTGAAGGAGCAGATTGAAGGATTTACACCTCTGGCTGTGTCCCTCATCCGGGCAGACAAGTTTGCTGTCGTGTTTGACCCAGCCCAGATCAGCATGTTTTCCTATGAACAGGCCAAAGCGGTGACTGAAGCCCAGCGCTTGCTTTTGTCCCCTGTGCAGCTGACAGCTATGTCTATGGTGCTGACCGTCTGGGATGACAAACCTGTTGACTTCCGTGGCAGGTCACCAGGGCTGGCACTGTGCCCTAGTCCTCTCTGTCACCTTCTGGGACTGCTGATGGTGCTGTTAGTTTCTGCTCTGTAATGGCCTCCCCTTCTGATGGATAAACCCCTCAATGGGCCATGAGGACTCTCATGAGGACTCTCTCCCACACAACTTCCATGTTAAACAATAAGTGTAATATATTGGAGTAGCCCTGCAGGCTATTGTAATGTATGATTTGATAATGGGTGGATATTTATTTCTATCAGCAAATAATATCAAattggtcacacacatatttaacagattgtattacgggtgtagtgaaatgcttgcattcacaacaatacaaacacatctaaaagtaaaaataatggaattaagaaatatataaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU603880 lncRNA upstream 15999 63714119 ~ 63714435 (+) True G533228
TU603187 lncRNA upstream 55509 63673977 ~ 63674925 (+) True LOC110526321
TU603052 lncRNA upstream 181404 63465075 ~ 63549030 (+) False LOC100750227
TU603058 lncRNA upstream 181404 63520165 ~ 63549030 (+) True LOC100750227
TU603083 lncRNA upstream 368378 63361843 ~ 63362056 (+) True G532519
TU603895 lncRNA downstream 200 63757438 ~ 63757964 (+) True G533243
TU603998 lncRNA downstream 37967 63795205 ~ 63795548 (+) True G533337
TU604001 lncRNA downstream 38491 63795729 ~ 63800824 (+) True G533339
TU604014 lncRNA downstream 55464 63812702 ~ 63812909 (+) True G533351
TU604022 lncRNA downstream 66691 63823929 ~ 63824926 (+) True G533359
XM_036980684.1 mRNA upstream 2604 63702297 ~ 63727830 (+) False LOC110526325
XM_021607198.2 mRNA upstream 2604 63702298 ~ 63727830 (+) False LOC110526325
XM_036980683.1 mRNA upstream 2604 63702299 ~ 63727830 (+) False LOC110526325
XM_021607196.2 mRNA upstream 2604 63702300 ~ 63727830 (+) True LOC110526325
XM_036980676.1 mRNA upstream 31319 63684064 ~ 63699115 (+) False golm2
XM_021607199.2 mRNA downstream 1005 63758243 ~ 63762887 (+) True LOC110526326
XM_021607204.2 mRNA downstream 269447 64026685 ~ 64031533 (+) False LOC110526331
XM_021607205.2 mRNA downstream 269449 64026687 ~ 64032292 (+) False LOC110526331
XM_021607203.2 mRNA downstream 269453 64026691 ~ 64032292 (+) True LOC110526331
XM_021607209.2 mRNA downstream 460936 64218174 ~ 64277755 (+) False insyn1
TU603025 other upstream 386679 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 390936 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 531700 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 715448 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 907818 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 1011909 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1033084 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1356042 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 1399271 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 2090385 65847623 ~ 65849441 (+) True G535150

Expression Profile