RNA id: XM_021607199.2


Basic Information

Item Value
RNA id XM_021607199.2
length 2164
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC110526326
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63758243 ~ 63762887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTCCTTTCTTGAAAAAAAAGAAGAGTGCAGCAACTCCTAGCATTACAGAGCGGTAAAGCCTCGTCTACTTTCTCCATCTGCTTTGCCGCTTTCAGTTCAGAGTTCTGTCaaacccgcacacacacacatagccaagATGGCGGATGCCGACGATTGGGACGCTGACAACTTCGAGCTGGACGTCGCGCCGATCAAAAAGGCGGTAGTGCTGGACAAATGGGAAGGCGAAGACGAAGATGAAGATGTGAAGgataactgggatgatgaagaggaagagaagaaagcAGAGGCAAAGAAAGCTGAGGCCAAAGTGTCTGAGAAGAAAAAACTGGCCGAAAAAATTAAGGAGAAAGAAAACCGGCTAAGGAAAAAGCAACAAGAGCTAAAAAAGAAAttggaggaggaggaggaagagcttACACCCGAACAACAGCTAGCAGAAAAGTTGAAAGTCCAGAAGATGCAGGAGGAAGCTGACTTGGAGCTGGCAAAAGAGGCTTTTGGAATGTCAGGGGGTAGTACCACAAACAATGTTTCTGGAATTGATGCCATGTGCCCATCTTCTAAAGAGGACTTCACAGAGTTTGAAAAGCTGCTGAAAGTGAAAATATTACAGTATGAAAAATCTGTGCATTATTCAAGCTTCTTGGAGTCACTGTTTCGGGAGCTCTGTATTTCATTGGAAGTTGAAGACTTAAAGAAAATCAGCTCTTCCCTGACAGTGCTACTTAATGAAAAACAGAAGCAAGAAAAGGCAATCAAaggcaaaaagaagaagaaaggagCTGTACTTGGTGGCGGTATGAAAGCCAAGGGGAAAGATGACCTTGCAGACTATGGAGAATTCGATGGTGGCTACACCCAAGACTATGATGACTTCATGTGACGACGGCTATATCCCCACTGCCTTTTCACCCTTTAACCCTCAGAAATGCAGCTGTACTTCTCATGCTATCCAGTGTCATCCTGGAAAAACCTGAACAATGTGTCGCCCTTTCATTTTGCTTCAATGATCCGAGGGACTATACAGGGAGCATCCAGTACCAACACTTCTGTTAATACATAATGAAATTGCCTTTTCTCTCATTCAGCCTCCAAACTTCATAAAGATACAAAAACACAGTGAAAAATACTTTGTGATATGTAGAGCACATTTTTGATTTAGAGAAATTATATGCTCATGTCAAATTCTAGTTGCTACTGCAGTGACATCTAAACAAATTAGATTCTATGCAAATAATTTCACCCAGAATGTCTATAAATATAGATATTTCACTTTACCTGTCGATGGGTTTCTTACAGGAAAGTATATAGTATCTATAACGGTTGCCAAATACACATGTTATCTTTATCCATCAAAAGTTTCATTGTTCGTGCTTTGAAACTGACACTACATGTTTAGTAGTTTGAGATTTTACAGGGGGCTTATGCATTCACTGTAAAAATGGATAGACAAGTGTAATGCATTTTAGTTGGGCgctatccagattttcataccatcatactggtcctgAATGCACAAAACACATTTAAGCAGCAGGGATTTATCCAGGAGGATCttgattgtctctgctgtaaccaagaagcttgatcttgcaaGCGAACCACTGATCTAGTGTGTTAGTAAACCCAATGCATAGCTGGAGATAATTTATTTGGCATGTCTAAGATGGTTCTAAGCAGTTGTATTGAAAATCAAACTGTTTCAAATGTATACGGTATACAGCCCAAGCCTAATTCATTTTGCGATAGATGTGACCAAACCTCATGGCCATCCTCTGGATACGTCTGTGGAATATCCTTGAACAGTTGAAGCAAGAGGGATTTTAGGTATTTTTTTTTGTGCATGACGAATGAAATTTGCtcatcaattgttactaatgcaGATATAATTGTGATCTAGCAAGTTCACACAACTGGTCTCCTTAACATTGCTTCTGCAGGCTTGTATCAAGTGAGACAAGGAGGGGGATTATGGGCTGACCTTATTGTCTTCATAATGGTAGAAAGGGACATGTTTATTCCTATTTTCTAACATTTGATAGTTTTCAAATTGTTAAGGAAATTGGATGTGGTGTACAATATACTGTAAAAGATGACCAGCTCTTCAGTGTTTTATATGCATCTAATTTAATAAAATCACTGGTCGAAAGGATAAATTA

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03245 EIF3J; translation initiation factor 3 subunit J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU603895 lncRNA upstream 279 63757438 ~ 63757964 (+) True G533243
TU603897 lncRNA upstream 13504 63744493 ~ 63744739 (+) True G533245
TU603893 lncRNA upstream 15278 63742632 ~ 63742965 (+) True strc1
TU603892 lncRNA upstream 19031 63738964 ~ 63739212 (+) True G533240
TU603880 lncRNA upstream 43808 63714119 ~ 63714435 (+) True G533228
TU603998 lncRNA downstream 32318 63795205 ~ 63795548 (+) True G533337
TU604001 lncRNA downstream 32842 63795729 ~ 63800824 (+) True G533339
TU604014 lncRNA downstream 49815 63812702 ~ 63812909 (+) True G533351
TU604022 lncRNA downstream 61042 63823929 ~ 63824926 (+) True G533359
TU604023 lncRNA downstream 63968 63826855 ~ 63827729 (+) True G533360
XM_036980685.1 mRNA upstream 1005 63730434 ~ 63757238 (+) False strc1
XM_036980684.1 mRNA upstream 30413 63702297 ~ 63727830 (+) False LOC110526325
XM_021607198.2 mRNA upstream 30413 63702298 ~ 63727830 (+) False LOC110526325
XM_036980683.1 mRNA upstream 30413 63702299 ~ 63727830 (+) False LOC110526325
XM_021607196.2 mRNA upstream 30413 63702300 ~ 63727830 (+) True LOC110526325
XM_021607204.2 mRNA downstream 263798 64026685 ~ 64031533 (+) False LOC110526331
XM_021607205.2 mRNA downstream 263800 64026687 ~ 64032292 (+) False LOC110526331
XM_021607203.2 mRNA downstream 263804 64026691 ~ 64032292 (+) True LOC110526331
XM_021607209.2 mRNA downstream 455287 64218174 ~ 64277755 (+) False insyn1
XM_021607210.2 mRNA downstream 455287 64218174 ~ 64277755 (+) False insyn1
TU603025 other upstream 414488 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 418745 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 559509 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 743257 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 935627 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 1006260 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1027435 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1350393 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 1393622 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 2084736 65847623 ~ 65849441 (+) True G535150

Expression Profile