RNA id: XM_021607203.2


Basic Information

Item Value
RNA id XM_021607203.2
length 1839
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110526331
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64026685 ~ 64032292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGTGGAGAGCAGCCGCCATGGAATGAGGGAGAGCCAGATAGCGATTGGATAATCATATTAAGACGCAGATATCGCGAGTAGAGAGCAGTGTGCCTATTGGTCAGGACTGACGGGACAGCAGATTTACTGACAATGATAGGACAGCTACGGCATTGGAGATACATTACTTCCACGACCTCGTATAAAAAGTGAAATAACAGTGATTTATTCTACTTTATCTCTTCATTATCAAGCTTTGTCATTCCTCACATTCGATGAGGTGGAACTGATAGCATGCAGCCGAGGGACAGGACATTGTAAATAGCAACAGTGCGCTCAGGACAGGAGGTTCAAAAGATTGAGGACCAAAACAATCTGAACAACAAAACCAACAGTCATGGCTGCAGAGAATAACTTTCCTCCAATACCGGGGTTCATCCCCCTGCAGCCGTGTTTCTACCAGGACTTTGATGAGGAGATCCCTGAACAGCATCGCACCATGTGCAAGAGACTCTACCACCTGTGGATCTTGCATGCAATCACCCTGGCTGTGAATCTGGTGGGCTGCTTTGTGTGGATGCTGGGTGGAGGGGGCGTGACAAATTTTGGCATGGCCATCATATGGTTGATTCTCTTCACCCCCTGCTCCTATGTGTGTTGGTTCAGGCCCATCTACAAGGCCTTCAAGACTGACAGCTCGTTCAACTTCATGGCGTTCTTCTTTGTGTTCATGGCCCAGGTGGGCATCAGTATTATCCAGTGCATAGGGATCCCAGGCTGGGGAAACTGCGGCTGGCTGGCCACCATCTCTTTCTTCAGCTACAACCTTTGGATCGCCTTGCTGATGCTCATCCCCACCCTCTTTTTCACTGCCACGGCAACGCTGTCCTTCATCGCCCTCACCAAGgtCCATAACTTCTACCGTGGCAGCGGGGGAAGCATAGGCAAGGCTCAGGAGGAGTGGACTACAGGGGCCTGGAAGAACCCCCACGTCCAGCAGGCAGCGCAGCAGGCAGCTATGGGAGCCGCCACGGGGGCCATGATGCCGGATCAGCAGTACTCCAGCAACACCCCACAGTACAATGACAACCAGATGTAGGGGATAaagtggagggagggaagcaTGTCAAAGCATGAGCAGGAGTTTGTTATCTGTTTATCCCATCCCCCAAAAATGTGTCTTCATCACAGCAGCTCTTTCAATAGGCAATGGGTCTTCAACCCTTTCTTTGCCCAGGGACCCTctcccaggcaaaccggcaaCCTAGCCATTATTTTCTTCTCACATGTCTTGTCTTAGCATCAAGTGAATGATATGTTTGCAAAAATTTATGTCCAAGTCAAGAAAGTTTACCAGCAGCCAGCGGCACTTGACGCACTGGTAGCCTACAGTATGCCAGATACTTCAGTGTCAGCTGGTAATTGGCTCCAGTGAGTGTAATTAGCTCAATATTTGGAGTTAATAAATAATGTTGACATCATTAGAAAGAAGACATTCTCCTATTTCTACTGTAATAATTTATTCTGTTGTTGCTAGCGATATAACCCTGCTATAGGTcactatactacactatcacACTATACCAACTGACTCTGAACACCCATAACGTATAGACATTTCATGTTCCCAGCAACAACACTGAATTACAGTATctggtttctactgtgtgatGTCATATTCCTGCTTCTGCTGCTTTGTTTTGACGTGTCACATCAAAGATGCGTCCCTATCTTATATCACTGTGTTAGCAGGGCCCTGTGGCCACATGCACACAGCACCAACTCTGCTTGTCAGAGCTCATTTTGATCACCCACTATCCTCTCCTCAATGctcttcggggggggggggggggggggg

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU604074 lncRNA upstream 24895 63938389 ~ 64001796 (+) True G533410
TU604023 lncRNA upstream 198962 63826855 ~ 63827729 (+) True G533360
TU604022 lncRNA upstream 201765 63823929 ~ 63824926 (+) True G533359
TU604014 lncRNA upstream 213782 63812702 ~ 63812909 (+) True G533351
TU604001 lncRNA upstream 225867 63795729 ~ 63800824 (+) True G533339
TU604264 lncRNA downstream 13943 64046235 ~ 64046477 (+) True G533584
TU604266 lncRNA downstream 16159 64048451 ~ 64048682 (+) True G533586
TU604348 lncRNA downstream 81072 64113364 ~ 64113821 (+) True G533668
TU604379 lncRNA downstream 113329 64145621 ~ 64145854 (+) True G533697
TU604383 lncRNA downstream 115295 64147587 ~ 64147826 (+) True G533701
XM_021607199.2 mRNA upstream 263804 63758243 ~ 63762887 (+) True LOC110526326
XM_036980685.1 mRNA upstream 269453 63730434 ~ 63757238 (+) False strc1
XM_021607198.2 mRNA upstream 298861 63702298 ~ 63727830 (+) False LOC110526325
XM_021607209.2 mRNA downstream 185882 64218174 ~ 64277755 (+) False insyn1
XM_021607210.2 mRNA downstream 185882 64218174 ~ 64277755 (+) False insyn1
XM_021607215.2 mRNA downstream 462527 64494819 ~ 64499616 (+) False LOC110526337
XM_021607216.2 mRNA downstream 462585 64494877 ~ 64499616 (+) False LOC110526337
XM_021607217.2 mRNA downstream 462623 64494915 ~ 64499616 (+) False LOC110526337
TU603025 other upstream 682936 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 687193 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 827957 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 1011705 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 1204075 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 736855 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 758030 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1080988 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 1124217 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 1815331 65847623 ~ 65849441 (+) True G535150

Expression Profile