RNA id: XM_021607209.2


Basic Information

Item Value
RNA id XM_021607209.2
length 5088
RNA type mRNA
GC content 0.49
exon number 3
gene id insyn1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64218174 ~ 64277755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggagaggggatccAGGCAGAGGACACTGTAGCTACGTAGCTAGTGCTGTGTCTTTAAAACGCCAGGCCCCTCCTCCCACCACACAGTCAGAGCGGAGCAGCAAAGCAAGTTGTGCTGGCAATAGCCTGAGCCCCACGATAAACCCTGGCATCAGCCTGCCTTCATCCGGCAGTCAGCGAGGACACTTCAGGGCGCAGGGGCAGAGAGACgggacggagagagagtgagacagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagtgtcgtTAGGAGCAGGGCTCTGACTGATACAGATCCTCTCCACAGCTCTGTACGCAGTAGCTCTTTCTGCTGTTTCCCGACGCCGGCAGGGTTGATGAGGATGGcgggtggcttcttcctttccaCAGCATCGTCACTAGAGCAACGGTAGCATCAGCATCTACAGCAGCAACAGTTTCAGCCTCAGCATcatcagtagcagcagcagccggATCTATACTCTGCTGCTGGTCCCTATTCTTCAGCCGCCTCCTCTCTCTGGTGTCTAAGAGTGCTGCTGTCAGGGCCGTTCAGCCCACCTCCTCTTCCGactcctcctgcctcctcctcaagcctgcctcctcctccatcccGCCTCTTCCTCCACATCTCCATCCTCCACatgctctccctccttccttccgcTGAGACACGGCACTGAATGAATTCTTCACCCTCTGACTGGAGCTGCTTTCTCTGGGAAGACATGCTGCTGAGTctagagaggagaaaagagagagggaacgagacagaaaaagagagagaggaagaaaaaaacaactgctttcctttctgtctctccaggTGTCATGTGTGATTGGCCAGCTTGCCCTCTGGCAGTAGCATCAGCCTGGATTCAGTGTGTGTCTCACCCCCCTGCCTGTGCCTGGGCTCCGGCTGTCCCTGGGGACGCGCTACTGGGATTTACCTCTTACTGCTGGATGGAGATGGCGCAGGGCTTTCTGCCTTTTTGAAAACTGTTCACAGAAGGAGAAATACACAGATAAACAGAATAAGGAAATATAATGAATCaatcagcagcacaaccaggcAGACTACTGGATTCCCTTAGCAACAACTCAGGGAGAATAAGAGAGAAGTGAATTGTCTCTTCCTATCTTCTCTGGTGTCTGGTTTCTGGGCGCAACCCTGCAGACCAGAGTGGACCAACAGTCGGATCTGAAAGAGCAGGACAAGGGGCACTGCAAGGGCACGAAGGACACGCAAGTCACCCTAACACCAGGGGAAGgaccctcctcttccacctcctcctgttcATCACCATGTTGGTTTGTCATTCTTCCCCTGCACATTCTATTAATTAGTCACATTTTACTCGCTAAGACATCCGTTTATACTCATTCCTGCCAACTGGAATAAGCCCTGCCACTGAAGAAAATATTGGAcattcttcacacacacacaaacaagcacagagagactctcaccctcctcctaccttccttcctcctctctttgaCGAGAAATGAACAACACATGTCGGTCATCATCTGAGCATGAAATGGATGTGTGCAGAAGTTGCTTTTGATGTGGGCTATTTCTTTATTCCTTCAAGATTAGTTTATTCTCCTGTCACTTCTGAGAGAAAAGGAACACTGCACAGCAGAGGACACAGGAGGAATATCTCTTGTTTTCAAAAGGatttgtcctcctctctccctaaaAAAGACAGAAGCCAAACTGAGGGAGTATATGTAGAAGGCGAAGCTTGTCCCTACTGCCTACCAATAATGTAGACCAAGATCATTATCAAAAAAATAGCAACTGCTGGGAGTTCTACTTTTCTGTTACGCTTGGATATTCTGATCTACAGGGGAGGTTGAACATGTACCCCTTGTTCAGCTTGACAACCTGGGATGCACTCTTTTACAGTAACCTGGCTGACACCAAGTCACTGCATCGTACCCGCTAAATAAGATTGTAAAGGGAggtgagtgggaggggaaaagAGCAACTTCCTCATACAGACGATCTAAATAAATATCCTCCTCAGAGACCGATGCAAACGTATACACTGACACATGAGATGAGTAGGCTCTCTGGCTCAACACTATTATATAAGGTGTTTTCACACACACCATCTTAGCTCCTGTTCTTCTCTTTTTCCTCCTGTTCCGTGGATTTAACTTGAGTTTTTTCATGTTTCTTTTGGCTTCATTTTTGGTACGATCCATCCTGGAGTCATGGATGGAGGAGGGTAACGCAAGGGGGTTGAGCGCTCAGGCCAGGCAAGGTCTTTTGGCTGTCCAGGGGATTTTAAGATGTTGAGGTCTCCCTGCGTGGCCGGGGCCCCTGTTCGGATCAGTAGCACTGAGGCTCCTTGCGGCCAGAGACATGGACCCCGACTCGGCTCCCCCCCGCCCCTGCCCTCAGCCTCAGCCTGCCAGCCCCTGGCCCCAAGTCGCCCTGTGAAGGATGTCCCTCAGCAGAGCTCCGGCCCGGGACACCTCTGAGACCCCCAGCCAGACCCCCAGAGAACGGATCCGCAGCCACATGAAGATGGTGATCAACCAGCTGGACGGCATTCTCAAAGAGCTCAAGGATGTGGCCAAGGAACTCCGGGAGGTGGTGGGTCAGATCGACAAGCTGACGTCAGACTTTGACTTTGACCTGGAGCTGGATGACTGGACAGTGGCCACAGCGAGCAGCACGTCCAGCAGCGAGAGGGGCCTGGGAGAGGCCTTCAGGCTGGACTTCCTCAATCCTGACGTGCTCTCAGACAGCTGGGAGTTCTGCAGCTATCTGGAGGCCTCCGTCGCTGCAGCAAACGCCGCCCACAAAGCAGCGCCAACAGAGCAGCCCACGGATGCAGGGCTGGAGCCGGGGGCGGGGCGTGGGTGCATCCctacccagacccagaccccAACCCCACCCCCCACAACCGCCTCAGCCTACTCCCAAATGAATGGGGGGCTGCCAATCCCTAACGGACCTCTCATAGTCACCCCAGACTCGTCCAGTGCCAGCGAAGAGGCTTCCAGCTCCACACACAGCCACAAGACCTCTCGCACGTCCGGCACCAGAGAGAGAGTCCGCTTCAGTGACAAGATCCTATACCACGCCCTGTGCTGTGATGATGacgaggaggatgaagaggagggagatgaggagaaggGCGGCTGTGCGACCCCAGACACTGACGACAGTGAGCCCAGTCCTAGTCAAGCCGGCTCGCCCACACCACCGCTCTCCTCCTCAGAGCACTCCGTCCTCCATAACTGTCTGGACCCTTCTTATGTCTCGTTCCCAGTGAACGTGGCAGCGGGGACTCACACGCTGCCCAGAAAGGGTCTTCTCAATCTCGCAAGCTGCCGGAAAAAACTGCTACGGAACAGCAGCACACAGACTGTTTCAGATAAAAGCACCCAAACAGTACTGCCCTATATTCCAGCCAAACAGAAAACAAAGGACCACTGAGAAACAGTAACTTTACAACAACAGAACTAATGAAAAAGGACTGTGTACTATTTAATATTAAATACATAGATCATAGATTaatacacaaataaataaataaatacatattaatTACTAAATAAATACATGATATGGGAAATTACTCGACTACCTAAAGTCATTTTGAGGCTCAGGGAAATAAAGGATAAAGGCAGTTCCTTATGGCAGAGAGAAAAGGGATATTGACGGACCAAAAGGTTAGTGCCTGCTAATGTTAAGAAATGGACCGAAAGGATTCCCTATTTCTAACCATTTGCAACACTTATTGAGATTACTAAAGTAATCTTTTTTCTAGGAAGTTGAAATTGTTCTGAAATCGGAAAGTAAATGTGAAGAGGTCGTTTCCCTCCTCGTACACCAGTATAAATCACGAGAAAATATCATGCTTGTTCTTTAAGATGTGGTTAAAAAACACTGCACATTCTGTACACTGAGAATCTGTATAAACATTGTCTTTTTCATCTTCCAATTATTTCAAATGTCAAGGGGGTTCCTGGTGTAACAACAGGGAGTGTATCTAGATGCACAAGTCAAGCCTTCTTCTCTCTTTGATGTCATCATAAGTGAGTCAAGGCCCAGAAAAACACGGTTTGACCTGCCCTTGATTTTATTAATCAATTCAATAATTTATCTCTTGATCTGCTGCTGAAACTGTAGTTGTGGAAAGCAAGAAGAAAAACAGGTATTTTTGCGAGATTCTGTGCTCCAACTCCACATTGTGACATTTCCACTTGATCTGTCCGTTCCTCTCTGCAAGGGAGCAAGGTTGTTAGGGGTGAGGACTTGAATAGAAGTGCACAAAGTCAAGATGCAAAAGGTTATGTCTCTCCATTCTGAATCCCAGTAGGGATTTGGACTCAATAGAGCAGCATTTTATTCACAGGGATTATGCCAATAGCAGTGCTGATCAATAAGGCTGATTGAGAGAGTGCTGTGAGAGGTCTCTCTGCTGAGCAGGCAGACCCTGCTCCTGGGGGCCCACAACAAAAACTCACAGTTAGACCTCCATCTATTTCCTCTGCTATTAGTGGCAGACATGGACAGACGCAGCCTTCAAGAAAGAGATTGGCATTCAAGAAATGTGTGGCCGGATGTGAAAGAGTgggtgcagacagagagagatggagagagagagaagggggggaggagagagaggaagaaagagaggtggGAGAGTGAATGCATTGGAGAATGCAGGAGAGGGTAAAGGGCTGACCTCACAAAGAAAATGTGCTGCTAGATTGTTGTTAATCAACCCTCGGAACACAATCATTTCCCCTCTAATCACCAGGAGCTGACTCATGTCTCTGAGGATGGCCAGAGAGAACTCTTCTCCCAGATACAGATCTATTACTGTCCATAGGCCCCCAACTGCCCTGGGCCCCAGGTTATAGTGCagaagagaacacacacataatCAGGATTGGACTCTTTCAAGGACTATCCTTGACTACACATTCCATATATTTATCACATATTTTACATCTCATTATCTTATGTAAAGGGATTTTGTTAAAACACACATAATGAACACATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU604451 lncRNA upstream 7125 64210515 ~ 64211049 (+) True G533766
TU604447 lncRNA upstream 9774 64208142 ~ 64208400 (+) True G533762
TU604446 lncRNA upstream 10265 64207703 ~ 64207909 (+) True G533761
TU604437 lncRNA upstream 21096 64190790 ~ 64197078 (+) True G533752
TU604433 lncRNA upstream 32255 64185711 ~ 64185919 (+) True G533748
TU604552 lncRNA downstream 75135 64352890 ~ 64353122 (+) True G533864
TU604577 lncRNA downstream 115406 64393161 ~ 64393475 (+) True G533889
TU604586 lncRNA downstream 127175 64404930 ~ 64406861 (+) False G533898
TU604587 lncRNA downstream 127175 64404930 ~ 64406861 (+) True G533898
TU604592 lncRNA downstream 137353 64415108 ~ 64415435 (+) True G533903
XM_021607205.2 mRNA upstream 185882 64026687 ~ 64032292 (+) False LOC110526331
XM_021607203.2 mRNA upstream 185882 64026691 ~ 64032292 (+) True LOC110526331
XM_021607204.2 mRNA upstream 186641 64026685 ~ 64031533 (+) False LOC110526331
XM_021607199.2 mRNA upstream 455287 63758243 ~ 63762887 (+) True LOC110526326
XM_036980685.1 mRNA upstream 460936 63730434 ~ 63757238 (+) False strc1
XM_021607215.2 mRNA downstream 217064 64494819 ~ 64499616 (+) False LOC110526337
XM_021607216.2 mRNA downstream 217122 64494877 ~ 64499616 (+) False LOC110526337
XM_021607217.2 mRNA downstream 217160 64494915 ~ 64499616 (+) False LOC110526337
XM_036980689.1 mRNA downstream 217280 64495035 ~ 64499621 (+) False LOC110526337
XM_036980690.1 mRNA downstream 217280 64495035 ~ 64499621 (+) True LOC110526337
TU603025 other upstream 874419 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 878676 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1019440 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 1203188 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 1395558 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 491392 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 512567 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 835525 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 878754 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 1569868 65847623 ~ 65849441 (+) True G535150

Expression Profile