RNA id: XM_036980690.1


Basic Information

Item Value
RNA id XM_036980690.1
length 1519
RNA type mRNA
GC content 0.54
exon number 11
gene id LOC110526337
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64494819 ~ 64499621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTACTTGCTAAAAATGTTCATGCCTAATCAACAACTCATGATGTCGGAGTGGCACCTGTCATTGAAGCTGGTGGATCAGCCCAAATCCACCTTCCACTTCCCTGAGACGATGCCTGGAGACGTGTCTCCCGGCGGGTACCGAGTCTCTACTCTGAAACAGCTCGTTGCAGCACAGCTTCCTGATTCCCTACCGGACCCCGAACTCATAGAGCTGGTACACTGTGGTCGCAAGTTGAAGGACGACCTGACTTTAGACTCCTGTGGGATCCAGCCTGGATCCACCCTGCACATCCTCAAAAGGACCTGGCCTGAACCAGAAATCAATCCAGAGCCAGTGAACAGGACGACTGCAGCCAGGGAGTTCCGTGTGCTGCAGGCAGCCCTCCACTCCAACTCCACCTATAGAGACTCGGTGTTTAAGATGCTGACTAATAAGGAGTCTCTAGATCAGATCATTGTGGCCACGCCAGGGCTGAGATCTGACCCGGTAGCACTAGGAGTGCTTCAAGACAAAGATCTATTTGTGCAATTCACAGACCCTAACATGCTGGATGTGTTGATCAGTTCTCACCCAGCCTTGGTCAATGCCATCATCCTGGTCCTCCACTCAGTGGCTGGCAGCATGCCTGCTCAGTCCAGCGCCGGCTCCTCCCGCAACGTCTCCTCCAGCTCCTACAGTGACATGCCGGGAGGGTTTATGTTTGAGGGCATGTCTGATGACGATGAAGATTTCCAATCGGGAAATCCGGCAGGCCCATCCAACCGAACCGGGGGCCCAGCAGGAATGCGGCCTGTGTCccttggccatagtggagctACAGGCCCTCGACCCATAACACAGAGTGAGCTGGCCACTGCCCTGGCCCTGGCCAGTACTCCTGAGAGCAGTGCTGTTACTCCCACTGCAGGGGCTCAGGACCCCTCATCTGGAGTGCCTCCCATGCCAGCAGGGACTCCTGTCAGCAATGACCTTTTCAGCCAGGCACTGCAGCAGGCTCTACAGGCCTCCAGCATGTCCGGCATGTCCTCTCTGCAGGGGCGTTGGCAGTCCCAGCTGCAGCAGCTGAGAGACATGGGGATCCAGGATGAGGAGCTGATGTTACGGGCGCTGCAGGCTACAGACGGGGACATCCAGTCAGCTCTGGAGCTCATCTTCGCTGGAGGTCCAGGACTCTGAGCCAAGCCAGGGCCCTGAGAGAGGAGAGTGCAGGGGGAAACGTCTCTACACAGACCCAAGCTGATGGCTCTGGTCATTCTGCCATTAGGCTGtgatatgagagagaggagagtgcagGGGGAAACGTCTCTACACAGACCCAAGCTGATGCTCTGGTCATTCTGCCATTAGGCTGTGATATGGATACTTAAATGGACACAATGCTTCAGACATGAAGACCTCATTACTACTCCTCTACCCTTTCATACACAGCCTAAATGGAACAACCTTTAAATGGCTGGCAAAACATTTCTTATTTTTGTTTTTGACTTGTAATAAAGATAAACATGTACCTTATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU604597 lncRNA upstream 78206 64415718 ~ 64416829 (+) True G533907
TU604592 lncRNA upstream 79600 64415108 ~ 64415435 (+) True G533903
TU604586 lncRNA upstream 88174 64404930 ~ 64406861 (+) False G533898
TU604587 lncRNA upstream 88174 64404930 ~ 64406861 (+) True G533898
TU604577 lncRNA upstream 101560 64393161 ~ 64393475 (+) True G533889
TU604645 lncRNA downstream 4485 64504106 ~ 64507098 (+) True G533953
TU604685 lncRNA downstream 54243 64553864 ~ 64573072 (+) True G533991
TU604830 lncRNA downstream 258209 64757830 ~ 64758115 (+) True G534128
TU604832 lncRNA downstream 260613 64760234 ~ 64760505 (+) True G534130
TU604826 lncRNA downstream 265878 64765499 ~ 64765678 (+) True LOC110526343
XM_021607209.2 mRNA upstream 217280 64218174 ~ 64277755 (+) False insyn1
XM_021607210.2 mRNA upstream 217280 64218174 ~ 64277755 (+) False insyn1
XM_021607205.2 mRNA upstream 462743 64026687 ~ 64032292 (+) False LOC110526331
XM_021607203.2 mRNA upstream 462743 64026691 ~ 64032292 (+) True LOC110526331
XM_021607204.2 mRNA upstream 463502 64026685 ~ 64031533 (+) False LOC110526331
XM_021607229.2 mRNA downstream 253408 64753029 ~ 64765798 (+) False LOC110526343
XM_021607230.2 mRNA downstream 269478 64769099 ~ 64781704 (+) False LOC110526344
XM_036980693.1 mRNA downstream 333003 64832624 ~ 64851098 (+) False chrna5
XM_021607231.2 mRNA downstream 333004 64832625 ~ 64851098 (+) False chrna5
XM_021607232.2 mRNA downstream 333010 64832631 ~ 64851098 (+) True chrna5
TU603025 other upstream 1151280 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1155537 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1296301 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 1480049 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 1672419 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 269526 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 290701 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 613659 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 656888 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 1348002 65847623 ~ 65849441 (+) True G535150

Expression Profile